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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052405 through 18771 annotations produced 1 hits

CG32405 (Cpr65Av):

Annotation Number : CG32405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052405
Gbrowse : chr3L:6132322-6133073 (-) // 100.0 //
Probeset : 1625438_at
Accessions : protein= NP_729146;, nucleotide= NM_168158;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0052405.
BDGP gene expression has embryonic in situ data for CG32405: 9 pix of staining in 7 body parts.
BioGrid reports that CG32405 interacts with CG9506 .
VDRC has 3 RNAi stocks for FBgn0052405 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10None
Head2 00 of 4 0.20None
Eye19 72 of 4 1.59None
Thoracicoabdominal ganglion1 00 of 4 0.10None
Salivary gland7 30 of 4 0.59None
Crop2 00 of 4 0.20None
Midgut2 00 of 4 0.20None
Tubule3 10 of 4 0.30Down
Hindgut2 00 of 4 0.20None
Heart5 10 of 4 0.49None
Fat body10 30 of 4 0.83None
Ovary1 00 of 4 0.20None
Testis2 00 of 4 0.20None
Male accessory glands6 20 of 4 0.50None
Virgin spermatheca8 10 of 4 0.72None
Mated spermatheca3 00 of 4 0.26None
Adult carcass4 20 of 4 0.40None
Larval CNS3 20 of 4 0.33None
Larval Salivary gland11 20 of 4 0.93None
Larval midgut11 20 of 4 0.94None
Larval tubule2 10 of 4 0.20None
Larval hindgut95 214 of 4 7.90Up
Larval fat body3 20 of 4 0.30None
Larval trachea2545 2154 of 4211.67Up
Larval carcass2604 4244 of 4216.58Up
S2 cells (growing)3 00 of 4 0.28None
Whole fly12 41 of 4

Looking for FBgn0052405. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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