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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052407 through 18771 annotations produced 1 hits


Annotation Number : CG32407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052407
Gbrowse : chr3L:5915154-5916670 (+) // 100.0 //
Probeset : 1637155_at
Accessions : protein= NP_729113;, nucleotide= NM_168147;
FlyMine data for FBgn0052407.
VDRC has 2 RNAi stocks for FBgn0052407 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 24 of 4 1.70Up
Head288 204 of 4 2.30Up
Eye859 1154 of 4 6.92Up
Thoracicoabdominal ganglion262 34 of 4 2.10Up
Salivary gland414 144 of 4 3.34Up
Crop490 124 of 4 4.00Up
Midgut830 814 of 4 6.70Up
Tubule515 924 of 4 4.10Up
Hindgut269 64 of 4 2.20Up
Heart238 84 of 4 1.92Up
Fat body42 34 of 4 0.35Down
Ovary6 00 of 4 0.10Down
Testis115 24 of 4 0.90None
Male accessory glands19 21 of 4 0.20Down
Virgin spermatheca86 84 of 4 0.70Down
Mated spermatheca100 114 of 4 0.81None
Adult carcass128 54 of 4 1.00None
Larval CNS40 44 of 4 0.33Down
Larval Salivary gland20 24 of 4 0.16Down
Larval midgut772 404 of 4 6.22Up
Larval tubule68 24 of 4 0.50Down
Larval hindgut79 64 of 4 0.64Down
Larval fat body314 924 of 4 2.50None
Larval trachea556 564 of 4 4.48Up
Larval carcass45 54 of 4 0.37Down
S2 cells (growing)69 54 of 4 0.56Down
Whole fly124 74 of 4

Looking for FBgn0052407. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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