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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052409 through 18771 annotations produced 1 hits



(CG32409):

Annotation Number : CG32409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052409
Gbrowse : chr3L:5892641-5894017 (+) // 100.0 //
Probeset : 1630438_at
Accessions : protein= NP_729108;, nucleotide= NM_168144;
Pathway : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0052409.
BDGP gene expression has embryonic in situ data for CG32409: 16 pix of staining in 16 body parts.
VDRC has 1 RNAi stocks for FBgn0052409 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 14 of 4 0.20Down
Head46 14 of 4 0.30Down
Eye33 14 of 4 0.21Down
Thoracicoabdominal ganglion44 24 of 4 0.30Down
Salivary gland46 44 of 4 0.29Down
Crop52 34 of 4 0.30Down
Midgut52 34 of 4 0.30Down
Tubule72 164 of 4 0.40Down
Hindgut45 24 of 4 0.30Down
Heart43 44 of 4 0.27Down
Fat body59 24 of 4 0.36Down
Ovary285 24 of 4 1.80Up
Testis66 34 of 4 0.40Down
Male accessory glands126 64 of 4 0.80Down
Virgin spermatheca38 44 of 4 0.24Down
Mated spermatheca70 54 of 4 0.44Down
Adult carcass47 44 of 4 0.30Down
Larval CNS158 44 of 4 0.98None
Larval Salivary gland85 34 of 4 0.52Down
Larval midgut35 14 of 4 0.22Down
Larval tubule20 14 of 4 0.10Down
Larval hindgut53 104 of 4 0.33Down
Larval fat body37 62 of 4 0.20Down
Larval trachea132 224 of 4 0.82None
Larval carcass82 224 of 4 0.51Down
S2 cells (growing)144 44 of 4 0.89None
Whole fly162 104 of 4

Looking for FBgn0052409. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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