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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052413 through 18771 annotations produced 1 hits



(CG32413):

Annotation Number : CG32413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052413
Gbrowse : chr3L:5896161-5897101 (-) // 100.0 //
Probeset : 1627937_at
Accessions : protein= NP_001097521;, nucleotide= NM_001104051;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0052413.
VDRC has 2 RNAi stocks for FBgn0052413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40Down
Head1 10 of 4 0.30Down
Eye2 10 of 4 0.32Down
Thoracicoabdominal ganglion6 10 of 4 0.90None
Salivary gland2 00 of 4 0.38Down
Crop2 10 of 4 0.30Down
Midgut2 10 of 4 0.40Down
Tubule1 00 of 4 0.30Down
Hindgut1 00 of 4 0.20Down
Heart1 00 of 4 0.27Down
Fat body3 20 of 4 0.54None
Ovary0 00 of 4 0.10Down
Testis4 01 of 4 0.70Down
Male accessory glands555 134 of 477.40Up
Virgin spermatheca4 00 of 4 0.56Down
Mated spermatheca1 10 of 4 0.26Down
Adult carcass4 20 of 4 0.60None
Larval CNS2 10 of 4 0.32Down
Larval Salivary gland0 00 of 4 0.05Down
Larval midgut1 00 of 4 0.21Down
Larval tubule2 10 of 4 0.30Down
Larval hindgut1 00 of 4 0.26Down
Larval fat body3 10 of 4 0.50None
Larval trachea1 10 of 4 0.20Down
Larval carcass1 00 of 4 0.15Down
S2 cells (growing)0 00 of 4 0.14Down
Whole fly7 01 of 4

Looking for FBgn0052413. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime