FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052423 through 18771 annotations produced 3 hits

alan shepard (shep):

Annotation Number : CT29814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052423
Gbrowse : chr3L:5268668-5271020 (-) // 100.0 //
Probeset : 1636443_s_at
Accessions : protein= NP_001163350; /// NP_729054; /// NP_729055; /// NP_729056; /// NP_729057;, nucleotide= NM_001169879; /// NM_168111; /// NM_168112; /// NM_168113; /// NM_168114;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0052423.
BDGP gene expression has embryonic in situ data for CG32423: 25 pix of staining in 17 body parts.
TRiP has 2 RNAi stocks for FBgn0052423 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052423 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	27 ± 1	4 of 4	2.40	Up
Head	8 ± 1	1 of 4	0.80	None
Eye	13 ± 3	2 of 4	1.18	None
Thoracicoabdominal ganglion	23 ± 2	4 of 4	2.00	Up
Salivary gland	11 ± 2	0 of 4	1.01	None
Crop	17 ± 2	3 of 4	1.50	None
Midgut	11 ± 2	1 of 4	1.00	None
Tubule	10 ± 0	1 of 4	0.90	None
Hindgut	19 ± 1	2 of 4	1.60	Up
Heart	10 ± 1	1 of 4	0.95	None
Fat body	15 ± 4	0 of 4	1.32	None
Ovary	24 ± 1	4 of 4	2.10	Up
Testis	5 ± 1	0 of 4	0.40	Down
Male accessory glands	19 ± 3	3 of 4	1.60	None
Virgin spermatheca	13 ± 1	2 of 4	1.13	None
Mated spermatheca	13 ± 2	3 of 4	1.20	None
Adult carcass	20 ± 1	2 of 4	1.80	Up
Larval CNS	19 ± 2	4 of 4	1.70	Up
Larval Salivary gland	17 ± 2	1 of 4	1.54	None
Larval midgut	4 ± 1	0 of 4	0.36	Down
Larval tubule	28 ± 1	4 of 4	2.50	Up
Larval hindgut	9 ± 1	1 of 4	0.80	None
Larval fat body	36 ± 4	4 of 4	3.20	Up
Larval trachea	22 ± 1	2 of 4	1.93	Up
Larval carcass	15 ± 2	2 of 4	1.35	None
S2 cells (growing)	15 ± 0	1 of 4	1.33	None
Whole fly	11 ± 1	4 of 4

alan shepard (shep):

Annotation Number : CG32423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052423
Gbrowse : chr3L:5153774-5271044 (-) // 100.0 //
Probeset : 1637552_s_at
Accessions : protein= NP_001163350; /// NP_729054; /// NP_729055; /// NP_729056; /// NP_729057;, nucleotide= NM_001169879; /// NM_168111; /// NM_168112; /// NM_168113; /// NM_168114;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0052423.
BDGP gene expression has embryonic in situ data for CG32423: 25 pix of staining in 17 body parts.
TRiP has 2 RNAi stocks for FBgn0052423 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052423 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	528 ± 32	4 of 4	4.90	Up
Head	131 ± 14	4 of 4	1.20	None
Eye	100 ± 7	4 of 4	0.93	None
Thoracicoabdominal ganglion	356 ± 22	4 of 4	3.30	Up
Salivary gland	81 ± 7	4 of 4	0.75	Down
Crop	135 ± 9	4 of 4	1.30	None
Midgut	81 ± 10	4 of 4	0.80	None
Tubule	125 ± 8	4 of 4	1.20	Up
Hindgut	85 ± 5	4 of 4	0.80	Down
Heart	150 ± 10	4 of 4	1.39	Up
Fat body	143 ± 15	4 of 4	1.32	Up
Ovary	203 ± 3	4 of 4	1.90	Up
Testis	43 ± 2	4 of 4	0.40	Down
Male accessory glands	89 ± 6	4 of 4	0.80	Down
Virgin spermatheca	212 ± 34	4 of 4	1.97	None
Mated spermatheca	193 ± 12	4 of 4	1.78	Up
Adult carcass	63 ± 1	4 of 4	0.60	Down
Larval CNS	503 ± 132	4 of 4	4.65	Up
Larval Salivary gland	217 ± 36	4 of 4	2.01	None
Larval midgut	284 ± 26	4 of 4	2.62	Up
Larval tubule	211 ± 27	4 of 4	2.00	Up
Larval hindgut	266 ± 19	4 of 4	2.46	Up
Larval fat body	121 ± 15	4 of 4	1.10	None
Larval trachea	84 ± 6	4 of 4	0.78	Down
Larval carcass	175 ± 10	4 of 4	1.62	Up
S2 cells (growing)	142 ± 16	4 of 4	1.32	None
Whole fly	108 ± 4	4 of 4

alan shepard (shep):

Annotation Number : HDC08568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052423
Gbrowse : chr3L:5263291-5265340 (-) // 99.18 //
Probeset : 1632939_s_at
Accessions : protein= NP_001163350; /// NP_729054; /// NP_729055; /// NP_729056; /// NP_729057;, nucleotide= NM_001169879; /// NM_168111; /// NM_168112; /// NM_168113; /// NM_168114;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0052423.
BDGP gene expression has embryonic in situ data for CG32423: 25 pix of staining in 17 body parts.
TRiP has 2 RNAi stocks for FBgn0052423 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052423 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	129 ± 5	4 of 4	45.70	Up
Head	8 ± 3	0 of 4	2.90	None
Eye	7 ± 2	0 of 4	2.51	None
Thoracicoabdominal ganglion	67 ± 9	4 of 4	23.80	Up
Salivary gland	4 ± 0	0 of 4	1.43	None
Crop	2 ± 0	0 of 4	0.90	None
Midgut	3 ± 0	0 of 4	1.10	None
Tubule	3 ± 0	0 of 4	1.30	Up
Hindgut	5 ± 1	0 of 4	1.80	None
Heart	1 ± 0	0 of 4	0.67	None
Fat body	2 ± 1	0 of 4	0.91	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	5 ± 1	0 of 4	2.00	None
Male accessory glands	4 ± 0	0 of 4	1.40	None
Virgin spermatheca	2 ± 0	0 of 4	0.73	None
Mated spermatheca	1 ± 0	0 of 4	0.65	None
Adult carcass	3 ± 0	0 of 4	1.30	None
Larval CNS	24 ± 4	1 of 4	8.52	Up
Larval Salivary gland	2 ± 0	0 of 4	0.86	None
Larval midgut	4 ± 1	0 of 4	1.43	None
Larval tubule	3 ± 0	0 of 4	1.10	None
Larval hindgut	2 ± 0	0 of 4	0.85	None
Larval fat body	6 ± 2	0 of 4	2.10	None
Larval trachea	5 ± 2	0 of 4	1.81	None
Larval carcass	2 ± 0	0 of 4	0.93	None
S2 cells (growing)	1 ± 0	0 of 4	0.63	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0052423. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720