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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052425 through 18771 annotations produced 3 hits



(CG32425):

Annotation Number : CG32425
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052425
Gbrowse : chr3L:20490411-20507207 (+) // 99.76 //
Probeset : 1640633_s_at
Accessions : protein= NP_001097649; /// NP_730546; /// NP_730547; /// NP_730548; /// NP_730549;, nucleotide= NM_001104179; /// NM_168860; /// NM_168861; /// NM_168862; /// NM_168863;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052425.
BDGP gene expression has embryonic in situ data for CG32425: 4 pix of staining in 1 body parts.
BioGrid reports that CG32425 interacts with CG4006 CG3287 CG4394 CG5642 CG8933 .
VDRC has 3 RNAi stocks for FBgn0052425 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain414 104 of 4 1.20Up
Head192 74 of 4 0.60Down
Eye255 164 of 4 0.76Down
Thoracicoabdominal ganglion450 94 of 4 1.30Up
Salivary gland58 104 of 4 0.17Down
Crop94 54 of 4 0.30Down
Midgut53 34 of 4 0.20Down
Tubule104 34 of 4 0.30Down
Hindgut156 84 of 4 0.50Down
Heart164 134 of 4 0.49Down
Fat body149 194 of 4 0.44Down
Ovary483 114 of 4 1.40Up
Testis272 114 of 4 0.80None
Male accessory glands715 1094 of 4 2.10Up
Virgin spermatheca147 44 of 4 0.44Down
Mated spermatheca158 184 of 4 0.47Down
Adult carcass145 154 of 4 0.40Down
Larval CNS314 144 of 4 0.93None
Larval Salivary gland116 34 of 4 0.34Down
Larval midgut65 14 of 4 0.19Down
Larval tubule89 34 of 4 0.30Down
Larval hindgut145 74 of 4 0.43Down
Larval fat body240 94 of 4 0.70Down
Larval trachea184 184 of 4 0.54Down
Larval carcass134 54 of 4 0.40Down
S2 cells (growing)172 14 of 4 0.51Down
Whole fly338 224 of 4



(CG32425):

Annotation Number : CT32503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052425
Gbrowse : chr3L:20490434-20491593 (+) // 100.0 //
Probeset : 1636500_at
Accessions : protein= NP_001097649; /// NP_730546; /// NP_730547; /// NP_730548; /// NP_730549;, nucleotide= NM_001104179; /// NM_168860; /// NM_168861; /// NM_168862; /// NM_168863;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052425.
BDGP gene expression has embryonic in situ data for CG32425: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0052425 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 14 of 4 2.10Up
Head9 20 of 4 0.70None
Eye3 01 of 4 0.29Down
Thoracicoabdominal ganglion15 32 of 4 1.30None
Salivary gland17 60 of 4 1.43None
Crop6 20 of 4 0.50None
Midgut6 10 of 4 0.50None
Tubule8 10 of 4 0.70Down
Hindgut7 10 of 4 0.60None
Heart5 10 of 4 0.40None
Fat body14 20 of 4 1.13None
Ovary14 13 of 4 1.20None
Testis3 10 of 4 0.30Down
Male accessory glands8 40 of 4 0.70None
Virgin spermatheca8 00 of 4 0.69None
Mated spermatheca5 00 of 4 0.46None
Adult carcass7 30 of 4 0.60None
Larval CNS9 31 of 4 0.73None
Larval Salivary gland13 10 of 4 1.05None
Larval midgut8 20 of 4 0.69None
Larval tubule11 00 of 4 0.90None
Larval hindgut5 10 of 4 0.44None
Larval fat body11 20 of 4 0.90None
Larval trachea3 10 of 4 0.29Down
Larval carcass6 10 of 4 0.52None
S2 cells (growing)28 14 of 4 2.24Up
Whole fly12 20 of 4



(CG32425):

Annotation Number : CG32425
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052425
Gbrowse : chr3L:20502733-20504200 (+) // 100.0 //
Probeset : 1625503_at
Accessions : protein= NP_001097649; /// NP_730546; /// NP_730547; /// NP_730548; /// NP_730549;, nucleotide= NM_001104179; /// NM_168860; /// NM_168861; /// NM_168862; /// NM_168863;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052425.
BDGP gene expression has embryonic in situ data for CG32425: 4 pix of staining in 1 body parts.
BioGrid reports that CG32425 interacts with CG4006 CG3287 CG4394 CG5642 CG8933 .
VDRC has 3 RNAi stocks for FBgn0052425 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 34 of 4 0.10Down
Head1176 1084 of 4 1.30None
Eye491 574 of 4 0.54Down
Thoracicoabdominal ganglion75 34 of 4 0.10Down
Salivary gland79 84 of 4 0.09Down
Crop110 44 of 4 0.10Down
Midgut108 64 of 4 0.10Down
Tubule142 164 of 4 0.20Down
Hindgut154 114 of 4 0.20Down
Heart2275 594 of 4 2.51Up
Fat body3510 4044 of 4 3.87Up
Ovary436 264 of 4 0.50Down
Testis63 104 of 4 0.10Down
Male accessory glands1307 2144 of 4 1.40None
Virgin spermatheca3823 344 of 4 4.21Up
Mated spermatheca3647 954 of 4 4.02Up
Adult carcass1931 1504 of 4 2.10Up
Larval CNS208 314 of 4 0.23Down
Larval Salivary gland161 94 of 4 0.18Down
Larval midgut126 94 of 4 0.14Down
Larval tubule60 34 of 4 0.10Down
Larval hindgut145 314 of 4 0.16Down
Larval fat body2144 2124 of 4 2.40Up
Larval trachea211 124 of 4 0.23Down
Larval carcass135 164 of 4 0.15Down
S2 cells (growing)743 274 of 4 0.82None
Whole fly907 1334 of 4

Looking for FBgn0052425. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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