FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052425 through 18771 annotations produced 3 hits

(CG32425):

Annotation Number : CG32425
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052425
Gbrowse : chr3L:20502733-20504200 (+) // 100.0 //
Probeset : 1625503_at
Accessions : protein= NP_001097649; /// NP_730546; /// NP_730547; /// NP_730548; /// NP_730549;, nucleotide= NM_001104179; /// NM_168860; /// NM_168861; /// NM_168862; /// NM_168863;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052425.
BDGP gene expression has embryonic in situ data for CG32425: 4 pix of staining in 1 body parts.
BioGrid reports that CG32425 interacts with CG4006 CG3287 CG4394 CG5642 CG8933 .
VDRC has 3 RNAi stocks for FBgn0052425 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	84 ± 3	4 of 4	0.10	Down
Head	1176 ± 108	4 of 4	1.30	None
Eye	491 ± 57	4 of 4	0.54	Down
Thoracicoabdominal ganglion	75 ± 3	4 of 4	0.10	Down
Salivary gland	79 ± 8	4 of 4	0.09	Down
Crop	110 ± 4	4 of 4	0.10	Down
Midgut	108 ± 6	4 of 4	0.10	Down
Tubule	142 ± 16	4 of 4	0.20	Down
Hindgut	154 ± 11	4 of 4	0.20	Down
Heart	2275 ± 59	4 of 4	2.51	Up
Fat body	3510 ± 404	4 of 4	3.87	Up
Ovary	436 ± 26	4 of 4	0.50	Down
Testis	63 ± 10	4 of 4	0.10	Down
Male accessory glands	1307 ± 214	4 of 4	1.40	None
Virgin spermatheca	3823 ± 34	4 of 4	4.21	Up
Mated spermatheca	3647 ± 95	4 of 4	4.02	Up
Adult carcass	1931 ± 150	4 of 4	2.10	Up
Larval CNS	208 ± 31	4 of 4	0.23	Down
Larval Salivary gland	161 ± 9	4 of 4	0.18	Down
Larval midgut	126 ± 9	4 of 4	0.14	Down
Larval tubule	60 ± 3	4 of 4	0.10	Down
Larval hindgut	145 ± 31	4 of 4	0.16	Down
Larval fat body	2144 ± 212	4 of 4	2.40	Up
Larval trachea	211 ± 12	4 of 4	0.23	Down
Larval carcass	135 ± 16	4 of 4	0.15	Down
S2 cells (growing)	743 ± 27	4 of 4	0.82	None
Whole fly	907 ± 133	4 of 4

(CG32425):

Annotation Number : CG32425
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052425
Gbrowse : chr3L:20490411-20507207 (+) // 99.76 //
Probeset : 1640633_s_at
Accessions : protein= NP_001097649; /// NP_730546; /// NP_730547; /// NP_730548; /// NP_730549;, nucleotide= NM_001104179; /// NM_168860; /// NM_168861; /// NM_168862; /// NM_168863;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052425.
BDGP gene expression has embryonic in situ data for CG32425: 4 pix of staining in 1 body parts.
BioGrid reports that CG32425 interacts with CG4006 CG3287 CG4394 CG5642 CG8933 .
VDRC has 3 RNAi stocks for FBgn0052425 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	414 ± 10	4 of 4	1.20	Up
Head	192 ± 7	4 of 4	0.60	Down
Eye	255 ± 16	4 of 4	0.76	Down
Thoracicoabdominal ganglion	450 ± 9	4 of 4	1.30	Up
Salivary gland	58 ± 10	4 of 4	0.17	Down
Crop	94 ± 5	4 of 4	0.30	Down
Midgut	53 ± 3	4 of 4	0.20	Down
Tubule	104 ± 3	4 of 4	0.30	Down
Hindgut	156 ± 8	4 of 4	0.50	Down
Heart	164 ± 13	4 of 4	0.49	Down
Fat body	149 ± 19	4 of 4	0.44	Down
Ovary	483 ± 11	4 of 4	1.40	Up
Testis	272 ± 11	4 of 4	0.80	None
Male accessory glands	715 ± 109	4 of 4	2.10	Up
Virgin spermatheca	147 ± 4	4 of 4	0.44	Down
Mated spermatheca	158 ± 18	4 of 4	0.47	Down
Adult carcass	145 ± 15	4 of 4	0.40	Down
Larval CNS	314 ± 14	4 of 4	0.93	None
Larval Salivary gland	116 ± 3	4 of 4	0.34	Down
Larval midgut	65 ± 1	4 of 4	0.19	Down
Larval tubule	89 ± 3	4 of 4	0.30	Down
Larval hindgut	145 ± 7	4 of 4	0.43	Down
Larval fat body	240 ± 9	4 of 4	0.70	Down
Larval trachea	184 ± 18	4 of 4	0.54	Down
Larval carcass	134 ± 5	4 of 4	0.40	Down
S2 cells (growing)	172 ± 1	4 of 4	0.51	Down
Whole fly	338 ± 22	4 of 4

(CG32425):

Annotation Number : CT32503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052425
Gbrowse : chr3L:20490434-20491593 (+) // 100.0 //
Probeset : 1636500_at
Accessions : protein= NP_001097649; /// NP_730546; /// NP_730547; /// NP_730548; /// NP_730549;, nucleotide= NM_001104179; /// NM_168860; /// NM_168861; /// NM_168862; /// NM_168863;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052425.
BDGP gene expression has embryonic in situ data for CG32425: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0052425 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	25 ± 1	4 of 4	2.10	Up
Head	9 ± 2	0 of 4	0.70	None
Eye	3 ± 0	1 of 4	0.29	Down
Thoracicoabdominal ganglion	15 ± 3	2 of 4	1.30	None
Salivary gland	17 ± 6	0 of 4	1.43	None
Crop	6 ± 2	0 of 4	0.50	None
Midgut	6 ± 1	0 of 4	0.50	None
Tubule	8 ± 1	0 of 4	0.70	Down
Hindgut	7 ± 1	0 of 4	0.60	None
Heart	5 ± 1	0 of 4	0.40	None
Fat body	14 ± 2	0 of 4	1.13	None
Ovary	14 ± 1	3 of 4	1.20	None
Testis	3 ± 1	0 of 4	0.30	Down
Male accessory glands	8 ± 4	0 of 4	0.70	None
Virgin spermatheca	8 ± 0	0 of 4	0.69	None
Mated spermatheca	5 ± 0	0 of 4	0.46	None
Adult carcass	7 ± 3	0 of 4	0.60	None
Larval CNS	9 ± 3	1 of 4	0.73	None
Larval Salivary gland	13 ± 1	0 of 4	1.05	None
Larval midgut	8 ± 2	0 of 4	0.69	None
Larval tubule	11 ± 0	0 of 4	0.90	None
Larval hindgut	5 ± 1	0 of 4	0.44	None
Larval fat body	11 ± 2	0 of 4	0.90	None
Larval trachea	3 ± 1	0 of 4	0.29	Down
Larval carcass	6 ± 1	0 of 4	0.52	None
S2 cells (growing)	28 ± 1	4 of 4	2.24	Up
Whole fly	12 ± 2	0 of 4

Looking for FBgn0052425. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720