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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052428 through 18771 annotations produced 1 hits



(CG32428):

Annotation Number : CG32428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052428
Gbrowse : chr3L:20463762-20466448 (-) // 100.0 //
Probeset : 1626508_at
Accessions : protein= NP_001163483; /// NP_652279;, nucleotide= NM_001170012; /// NM_144022;
FlyMine data for FBgn0052428.
BDGP gene expression has embryonic in situ data for CG32428: 12 pix of staining in 7 body parts.
BioGrid reports that CG32428 interacts with CG7399 .
VDRC has 2 RNAi stocks for FBgn0052428 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 ± 44 of 4 0.90Down
Head142 ± 164 of 4 0.60Down
Eye154 ± 74 of 4 0.68Down
Thoracicoabdominal ganglion188 ± 94 of 4 0.80Down
Salivary gland227 ± 384 of 4 1.00None
Crop437 ± 74 of 4 1.90Up
Midgut256 ± 154 of 4 1.10None
Tubule65 ± 34 of 4 0.30Down
Hindgut391 ± 134 of 4 1.70Up
Heart237 ± 114 of 4 1.04None
Fat body94 ± 254 of 4 0.41Down
Ovary381 ± 64 of 4 1.70Up
Testis75 ± 14 of 4 0.30Down
Male accessory glands98 ± 84 of 4 0.40Down
Virgin spermatheca99 ± 114 of 4 0.44Down
Mated spermatheca101 ± 114 of 4 0.44Down
Adult carcass151 ± 184 of 4 0.70Down
Larval CNS302 ± 294 of 4 1.33Up
Larval Salivary gland510 ± 144 of 4 2.24Up
Larval midgut167 ± 34 of 4 0.74Down
Larval tubule37 ± 24 of 4 0.20Down
Larval hindgut260 ± 124 of 4 1.14None
Larval fat body110 ± 24 of 4 0.50Down
Larval trachea430 ± 174 of 4 1.89Up
Larval carcass385 ± 364 of 4 1.69Up
S2 cells (growing)326 ± 54 of 4 1.43Up
Whole fly227 ± 34 of 4

Looking for FBgn0052428. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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