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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052432 through 18771 annotations produced 1 hits



(CG32432):

Annotation Number : CG32432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052432
Gbrowse : chr3L:20837424-20878288 (-) // 100.0 //
Probeset : 1624250_at
Accessions : protein= NP_649266;, nucleotide= NM_141009;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052432.
BioGrid reports that CG32432 interacts with CG4200 .
TRiP has 1 RNAi stocks for FBgn0052432 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain288 ± 134 of 420.80Up
Head43 ± 14 of 4 3.10Up
Eye29 ± 24 of 4 2.13Up
Thoracicoabdominal ganglion153 ± 94 of 411.00Up
Salivary gland22 ± 50 of 4 1.64None
Crop9 ± 00 of 4 0.70Down
Midgut13 ± 00 of 4 0.90None
Tubule8 ± 10 of 4 0.60Down
Hindgut7 ± 10 of 4 0.50Down
Heart2 ± 10 of 4 0.18Down
Fat body7 ± 40 of 4 0.55None
Ovary4 ± 10 of 4 0.40Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands4 ± 30 of 4 0.40None
Virgin spermatheca4 ± 10 of 4 0.34Down
Mated spermatheca6 ± 10 of 4 0.45Down
Adult carcass15 ± 30 of 4 1.10None
Larval CNS12 ± 00 of 4 0.90Down
Larval Salivary gland4 ± 10 of 4 0.31Down
Larval midgut4 ± 00 of 4 0.35Down
Larval tubule11 ± 00 of 4 0.80None
Larval hindgut3 ± 10 of 4 0.26Down
Larval fat body4 ± 10 of 4 0.30Down
Larval trachea2 ± 20 of 4 0.16Down
Larval carcass7 ± 10 of 4 0.54Down
S2 cells (growing)3 ± 10 of 4 0.27Down
Whole fly13 ± 00 of 4

Looking for FBgn0052432. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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