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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052438 through 18771 annotations produced 2 hits



Smc5 (Smc5):

Annotation Number : CG32438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052438
Gbrowse : chr3L:21562376-21566624 (+) // 100.0 //
Probeset : 1623590_s_at
Accessions : protein= NP_649334; /// NP_730660; /// NP_996141;, nucleotide= NM_141077; /// NM_168924; /// NM_206419;
Pathway : 0000796 // condensin complex // non-traceable author statement /// 0005634 // nucleus // inferred from sequence or struc
Interpro : 0005524 // ATP binding // inferred from electronic annotation
FlyMine data for FBgn0052438.
BDGP gene expression has embryonic in situ data for Smc5: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0052438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 24 of 4 0.50Down
Head33 14 of 4 0.30Down
Eye69 34 of 4 0.57Down
Thoracicoabdominal ganglion56 24 of 4 0.50Down
Salivary gland16 01 of 4 0.14Down
Crop29 14 of 4 0.20Down
Midgut21 24 of 4 0.20Down
Tubule21 24 of 4 0.20Down
Hindgut23 24 of 4 0.20Down
Heart19 14 of 4 0.16Down
Fat body9 21 of 4 0.08Down
Ovary272 24 of 4 2.20Up
Testis200 34 of 4 1.60Up
Male accessory glands27 34 of 4 0.20Down
Virgin spermatheca18 02 of 4 0.15Down
Mated spermatheca17 13 of 4 0.14Down
Adult carcass18 23 of 4 0.10Down
Larval CNS211 94 of 4 1.72Up
Larval Salivary gland22 14 of 4 0.18Down
Larval midgut21 24 of 4 0.18Down
Larval tubule30 14 of 4 0.20Down
Larval hindgut23 14 of 4 0.19Down
Larval fat body49 184 of 4 0.40Down
Larval trachea69 54 of 4 0.57Down
Larval carcass24 34 of 4 0.20Down
S2 cells (growing)184 94 of 4 1.50Up
Whole fly122 94 of 4



Smc5 (Smc5):

Annotation Number : CG32438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052438
Gbrowse : chr3L:21562376-21566624 (+) // 100.0 //
Probeset : 1623104_at
Accessions : protein= NP_649334; /// NP_730660; /// NP_996141;, nucleotide= NM_141077; /// NM_168924; /// NM_206419;
Pathway : 0000796 // condensin complex // non-traceable author statement /// 0005634 // nucleus // inferred from sequence or struc
Interpro : 0005524 // ATP binding // inferred from electronic annotation
FlyMine data for FBgn0052438.
BDGP gene expression has embryonic in situ data for Smc5: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0052438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 1.30None
Head7 03 of 4 1.20None
Eye27 74 of 4 4.45None
Thoracicoabdominal ganglion8 02 of 4 1.40Up
Salivary gland9 20 of 4 1.48None
Crop4 10 of 4 0.70None
Midgut1 00 of 4 0.30Down
Tubule7 01 of 4 1.20Up
Hindgut3 01 of 4 0.60Down
Heart4 00 of 4 0.71None
Fat body3 20 of 4 0.53None
Ovary5 03 of 4 0.90None
Testis6 02 of 4 1.00None
Male accessory glands7 00 of 4 1.10None
Virgin spermatheca2 10 of 4 0.35Down
Mated spermatheca4 10 of 4 0.70None
Adult carcass5 10 of 4 0.80None
Larval CNS16 24 of 4 2.57Up
Larval Salivary gland6 20 of 4 1.08None
Larval midgut3 10 of 4 0.63None
Larval tubule6 10 of 4 1.00None
Larval hindgut6 11 of 4 1.02None
Larval fat body5 30 of 4 0.80None
Larval trachea6 12 of 4 1.08None
Larval carcass4 20 of 4 0.79None
S2 cells (growing)10 04 of 4 1.71Up
Whole fly6 02 of 4

Looking for FBgn0052438. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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