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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052440 through 18771 annotations produced 1 hits


(CG32440):

Annotation Number : CG32440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052440
Gbrowse : chr3L:21353278-21354329 (+) // 100.0 //
Probeset : 1627504_at
Accessions : protein= NP_730626;, nucleotide= NM_168900;
FlyMine data for FBgn0052440.
VDRC has 1 RNAi stocks for FBgn0052440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head6 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.09Down
Crop7 ± 10 of 4 0.10Down
Midgut9 ± 01 of 4 0.10Down
Tubule5 ± 00 of 4 0.00Down
Hindgut8 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.02Down
Fat body10 ± 60 of 4 0.09Down
Ovary4 ± 10 of 4 0.00Down
Testis1336 ± 154 of 411.40Up
Male accessory glands7 ± 22 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.06Down
Mated spermatheca8 ± 20 of 4 0.08Down
Adult carcass14 ± 10 of 4 0.10Down
Larval CNS4 ± 30 of 4 0.03Down
Larval Salivary gland7 ± 10 of 4 0.07Down
Larval midgut14 ± 11 of 4 0.12Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut9 ± 00 of 4 0.08Down
Larval fat body128 ± 674 of 4 1.10None
Larval trachea5 ± 51 of 4 0.05Down
Larval carcass7 ± 20 of 4 0.06Down
S2 cells (growing)44 ± 24 of 4 0.38Down
Whole fly116 ± 64 of 4

Looking for FBgn0052440. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime