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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052442 through 18771 annotations produced 1 hits



(CG32442):

Annotation Number : CG32442
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052442
Gbrowse : chr3L:21521314-21522406 (-) // 100.0 //
Probeset : 1630989_a_at
Accessions : protein= NP_001137995; /// NP_730651; /// NP_730652;, nucleotide= NM_001144523; /// NM_168920; /// NM_168921;
FlyMine data for FBgn0052442.
BDGP gene expression has embryonic in situ data for CG32442: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 34 of 4 1.30Up
Head80 ± 24 of 4 1.20Up
Eye158 ± 44 of 4 2.35Up
Thoracicoabdominal ganglion79 ± 34 of 4 1.20None
Salivary gland130 ± 104 of 4 1.93Up
Crop122 ± 44 of 4 1.80Up
Midgut102 ± 24 of 4 1.50Up
Tubule94 ± 04 of 4 1.40Up
Hindgut110 ± 44 of 4 1.60Up
Heart103 ± 14 of 4 1.54Up
Fat body96 ± 34 of 4 1.43Up
Ovary110 ± 34 of 4 1.60Up
Testis26 ± 24 of 4 0.40Down
Male accessory glands40 ± 24 of 4 0.60Down
Virgin spermatheca75 ± 24 of 4 1.13None
Mated spermatheca74 ± 44 of 4 1.11None
Adult carcass64 ± 44 of 4 1.00None
Larval CNS97 ± 64 of 4 1.45Up
Larval Salivary gland113 ± 74 of 4 1.68Up
Larval midgut61 ± 04 of 4 0.92None
Larval tubule89 ± 14 of 4 1.30Up
Larval hindgut81 ± 24 of 4 1.21Up
Larval fat body56 ± 54 of 4 0.80None
Larval trachea84 ± 74 of 4 1.25Up
Larval carcass49 ± 24 of 4 0.73Down
S2 cells (growing)53 ± 54 of 4 0.80None
Whole fly67 ± 34 of 4

Looking for FBgn0052442. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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