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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052450 through 18771 annotations produced 1 hits



(CG32450):

Annotation Number : CG32450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052450
Gbrowse : chr3L:22322877-22323777 (+) // 100.0 //
Probeset : 1625609_at
Accessions : protein= NP_730717;, nucleotide= NM_168953;
FlyMine data for FBgn0052450.
BDGP gene expression has embryonic in situ data for CG32450: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052450 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.02Down
Crop6 ± 10 of 4 0.00Down
Midgut9 ± 30 of 4 0.10Down
Tubule3 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body6 ± 20 of 4 0.04Down
Ovary2 ± 00 of 4 0.00Down
Testis1421 ± 304 of 4 8.60Up
Male accessory glands12 ± 10 of 4 0.10Down
Virgin spermatheca7 ± 20 of 4 0.05Down
Mated spermatheca4 ± 00 of 4 0.03Down
Adult carcass9 ± 40 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.03Down
Larval Salivary gland6 ± 00 of 4 0.04Down
Larval midgut7 ± 10 of 4 0.04Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.03Down
Larval fat body239 ± 1074 of 4 1.40None
Larval trachea8 ± 111 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly165 ± 144 of 4

Looking for FBgn0052450. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime