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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052453 through 18771 annotations produced 1 hits



/// (CG14454 /// CG32453):

Annotation Number : CG32453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037177 /// FBgn0052453
Gbrowse : chr3L:22690338-22690772 (+) // 100.0 //
Probeset : 1631673_s_at
Accessions : protein= NP_649404; /// NP_730733;, nucleotide= NM_141147; /// NM_168954;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037177 /// FBgn0052453.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 10 of 4 0.50None
Head21 23 of 4 0.80None
Eye35 20 of 4 1.35None
Thoracicoabdominal ganglion21 13 of 4 0.80None
Salivary gland70 40 of 4 2.65Up
Crop32 11 of 4 1.20None
Midgut32 22 of 4 1.20None
Tubule27 01 of 4 1.00None
Hindgut24 21 of 4 0.90None
Heart23 20 of 4 0.87None
Fat body36 100 of 4 1.37None
Ovary17 20 of 4 0.70None
Testis14 01 of 4 0.60None
Male accessory glands33 30 of 4 1.30None
Virgin spermatheca38 21 of 4 1.43None
Mated spermatheca41 12 of 4 1.55None
Adult carcass38 82 of 4 1.40None
Larval CNS22 13 of 4 0.84None
Larval Salivary gland42 31 of 4 1.58None
Larval midgut49 11 of 4 1.85Up
Larval tubule34 14 of 4 1.30None
Larval hindgut20 30 of 4 0.78None
Larval fat body25 33 of 4 1.00None
Larval trachea39 61 of 4 1.50None
Larval carcass44 20 of 4 1.67Up
S2 cells (growing)23 20 of 4 0.89None
Whole fly26 52 of 4

Looking for FBgn0052453. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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