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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052457 through 18771 annotations produced 1 hits



(CG32457):

Annotation Number : CG32457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052457
Gbrowse : chr3L:22980609-22981260 (+) // 100.0 //
Probeset : 1638861_at
Accessions : protein= NP_001163497; /// NP_730771;, nucleotide= NM_001170026; /// NM_168982;
FlyMine data for FBgn0052457.
VDRC has 2 RNAi stocks for FBgn0052457 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 14 of 4 0.50Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion14 ± 24 of 4 0.20Down
Salivary gland9 ± 40 of 4 0.14Down
Crop4 ± 10 of 4 0.10Down
Midgut2 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut5 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.05Down
Fat body11 ± 43 of 4 0.17Down
Ovary0 ± 00 of 4 0.00Down
Testis1014 ± 304 of 415.10Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca7 ± 21 of 4 0.10Down
Mated spermatheca6 ± 21 of 4 0.09Down
Adult carcass2 ± 10 of 4 0.00Down
Larval CNS11 ± 24 of 4 0.17Down
Larval Salivary gland3 ± 10 of 4 0.06Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut3 ± 12 of 4 0.06Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea4 ± 20 of 4 0.06Down
Larval carcass3 ± 10 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly67 ± 64 of 4

Looking for FBgn0052457. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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