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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052463 through 18771 annotations produced 1 hits



(CG32463):

Annotation Number : CG32463
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052463
Gbrowse : chr2L:2238345-2239365 (-) // 100.0 //
Probeset : 1625277_at
Accessions : protein= NP_722779;, nucleotide= NM_164466;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity //
FlyMine data for FBgn0052463.
VDRC has 2 RNAi stocks for FBgn0052463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head1 00 of 4 0.30None
Eye3 00 of 4 0.66None
Thoracicoabdominal ganglion0 00 of 4 0.20None
Salivary gland1 00 of 4 0.29None
Crop1 00 of 4 0.30None
Midgut2 00 of 4 0.40None
Tubule2 00 of 4 0.40Down
Hindgut1 00 of 4 0.30None
Heart2 10 of 4 0.46None
Fat body3 20 of 4 0.73None
Ovary2 00 of 4 0.60None
Testis82 34 of 416.90Up
Male accessory glands2 00 of 4 0.50None
Virgin spermatheca1 00 of 4 0.29None
Mated spermatheca1 00 of 4 0.29None
Adult carcass5 20 of 4 1.10None
Larval CNS3 20 of 4 0.75None
Larval Salivary gland1 00 of 4 0.22None
Larval midgut3 00 of 4 0.67None
Larval tubule1 00 of 4 0.20None
Larval hindgut3 10 of 4 0.81None
Larval fat body8 21 of 4 1.70None
Larval trachea1 00 of 4 0.27None
Larval carcass2 00 of 4 0.42None
S2 cells (growing)1 10 of 4 0.30None
Whole fly4 10 of 4

Looking for FBgn0052463. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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