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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052483 through 18771 annotations produced 1 hits


(CG32483):

Annotation Number : CG32483
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052483
Gbrowse : chr3L:688584-690081 (-) // 100.0 //
Probeset : 1628500_at
Accessions : protein= NP_728540;, nucleotide= NM_167839;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase
FlyMine data for FBgn0052483.
Homophila reports that CG32483 is a close match (2e-14) to human gene CTSA;GLB2;GSL;NGBE;PPGB (NP_000299), a gene associated with Galactosialidosis (3).
VDRC has 3 RNAi stocks for FBgn0052483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head7 ± 21 of 4 0.10Down
Eye29 ± 24 of 4 0.37Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland6 ± 10 of 4 0.08Down
Crop6 ± 20 of 4 0.10Down
Midgut1322 ± 224 of 416.90Up
Tubule4 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart8 ± 13 of 4 0.10Down
Fat body26 ± 94 of 4 0.34Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands5 ± 00 of 4 0.10Down
Virgin spermatheca18 ± 64 of 4 0.24Down
Mated spermatheca28 ± 54 of 4 0.36Down
Adult carcass3 ± 20 of 4 0.00Down
Larval CNS6 ± 41 of 4 0.08Down
Larval Salivary gland10 ± 24 of 4 0.14Down
Larval midgut1430 ± 484 of 418.27Up
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.03Down
Larval fat body12 ± 41 of 4 0.20Down
Larval trachea2 ± 10 of 4 0.04Down
Larval carcass4 ± 00 of 4 0.06Down
S2 cells (growing)3 ± 11 of 4 0.05Down
Whole fly78 ± 144 of 4

Looking for FBgn0052483. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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