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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052506 through 18771 annotations produced 2 hits



/// (CG1695 /// CG32506):

Annotation Number : CG1695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031116 /// FBgn0052506
Gbrowse : chrX:20310367-20314504 (+) // 100.0 //
Probeset : 1638381_s_at
Accessions : protein= NP_608395; /// NP_728346;, nucleotide= NM_134551; /// NM_167705;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0031116 /// FBgn0052506.
BioGrid reports that CG1695 interacts with CG31764 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 14 of 418.00Up
Head18 43 of 4 3.40None
Eye9 12 of 4 1.82None
Thoracicoabdominal ganglion41 74 of 4 7.80Up
Salivary gland7 20 of 4 1.32None
Crop4 20 of 4 0.80None
Midgut3 00 of 4 0.60None
Tubule2 00 of 4 0.40Down
Hindgut2 10 of 4 0.50None
Heart1 10 of 4 0.35None
Fat body6 20 of 4 1.22None
Ovary0 00 of 4 0.10Down
Testis3 10 of 4 0.60None
Male accessory glands2 10 of 4 0.40None
Virgin spermatheca0 00 of 4 0.16Down
Mated spermatheca1 00 of 4 0.22Down
Adult carcass5 20 of 4 1.10None
Larval CNS21 64 of 4 4.14Up
Larval Salivary gland1 00 of 4 0.18Down
Larval midgut3 10 of 4 0.71None
Larval tubule2 00 of 4 0.50None
Larval hindgut2 00 of 4 0.41None
Larval fat body0 00 of 4 0.20Down
Larval trachea1 10 of 4 0.32None
Larval carcass0 00 of 4 0.11Down
S2 cells (growing)0 00 of 4 0.10Down
Whole fly5 10 of 4



(CG32506):

Annotation Number : CG32506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052506
Gbrowse : chrX:20329951-20336615 (+) // 100.0 //
Probeset : 1634547_at
Accessions : protein= NP_608395;, nucleotide= NM_134551;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0052506.
TRiP has 1 RNAi stocks for FBgn0052506 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 24 of 4 7.10Up
Head14 10 of 4 2.50Up
Eye2 00 of 4 0.35None
Thoracicoabdominal ganglion27 34 of 4 4.60Up
Salivary gland10 40 of 4 1.80None
Crop4 00 of 4 0.70None
Midgut7 10 of 4 1.20None
Tubule6 00 of 4 1.00None
Hindgut2 00 of 4 0.40None
Heart2 00 of 4 0.44None
Fat body8 40 of 4 1.37None
Ovary5 20 of 4 0.90None
Testis8 13 of 4 1.50None
Male accessory glands7 30 of 4 1.20None
Virgin spermatheca5 20 of 4 0.99None
Mated spermatheca7 30 of 4 1.17None
Adult carcass7 20 of 4 1.20None
Larval CNS26 24 of 4 4.49Up
Larval Salivary gland1 00 of 4 0.23None
Larval midgut7 20 of 4 1.24None
Larval tubule4 10 of 4 0.80None
Larval hindgut4 10 of 4 0.78None
Larval fat body2 00 of 4 0.40None
Larval trachea2 10 of 4 0.39None
Larval carcass9 30 of 4 1.56None
S2 cells (growing)10 10 of 4 1.82None
Whole fly6 20 of 4

Looking for FBgn0052506. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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