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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052507 through 18771 annotations produced 1 hits



():

Annotation Number : CG32507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:20651598-20652180 (-) // 100.0 //
Probeset : 1629226_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head1 ± 00 of 4 0.50None
Eye2 ± 10 of 4 0.76None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland10 ± 30 of 4 2.90None
Crop2 ± 00 of 4 0.70None
Midgut4 ± 10 of 4 1.20None
Tubule1 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.30None
Heart1 ± 00 of 4 0.48None
Fat body1 ± 00 of 4 0.44None
Ovary0 ± 00 of 4 0.30None
Testis23 ± 01 of 4 6.60Up
Male accessory glands0 ± 00 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.48None
Mated spermatheca1 ± 00 of 4 0.45None
Adult carcass1 ± 00 of 4 0.50None
Larval CNS0 ± 00 of 4 0.20None
Larval Salivary gland7 ± 10 of 4 2.03None
Larval midgut1 ± 00 of 4 0.51None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut1 ± 00 of 4 0.31None
Larval fat body7 ± 20 of 4 2.20None
Larval trachea1 ± 00 of 4 0.48None
Larval carcass2 ± 00 of 4 0.64None
S2 cells (growing)1 ± 00 of 4 0.37None
Whole fly3 ± 10 of 4

Looking for FBgn0052507. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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