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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052512 through 18771 annotations produced 1 hits



(CG32512):

Annotation Number : CG32512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052512
Gbrowse : chrX:20933410-20938549 (-) // 100.0 //
Probeset : 1637936_at
Accessions : protein= NP_608428;, nucleotide= NM_134584;
FlyMine data for FBgn0052512.
BDGP gene expression has embryonic in situ data for CG32512: 4 pix of staining in 1 body parts.
BioGrid reports that CG32512 interacts with CG9986 .
VDRC has 1 RNAi stocks for FBgn0052512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 04 of 4 0.10Down
Head56 ± 54 of 4 0.30Down
Eye13 ± 22 of 4 0.07Down
Thoracicoabdominal ganglion30 ± 34 of 4 0.20Down
Salivary gland71 ± 13 of 4 0.39Down
Crop40 ± 34 of 4 0.20Down
Midgut209 ± 114 of 4 1.10None
Tubule18 ± 12 of 4 0.10Down
Hindgut82 ± 24 of 4 0.50Down
Heart206 ± 144 of 4 1.13None
Fat body385 ± 934 of 4 2.12Up
Ovary267 ± 74 of 4 1.50Up
Testis114 ± 74 of 4 0.60Down
Male accessory glands399 ± 294 of 4 2.20Up
Virgin spermatheca46 ± 44 of 4 0.26Down
Mated spermatheca41 ± 44 of 4 0.23Down
Adult carcass242 ± 264 of 4 1.30None
Larval CNS43 ± 34 of 4 0.24Down
Larval Salivary gland58 ± 74 of 4 0.32Down
Larval midgut283 ± 134 of 4 1.56Up
Larval tubule23 ± 24 of 4 0.10Down
Larval hindgut618 ± 1754 of 4 3.40None
Larval fat body172 ± 164 of 4 0.90None
Larval trachea158 ± 244 of 4 0.87None
Larval carcass92 ± 84 of 4 0.51Down
S2 cells (growing)315 ± 54 of 4 1.73Up
Whole fly182 ± 184 of 4

Looking for FBgn0052512. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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