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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052521 through 18771 annotations produced 2 hits



(CG32521):

Annotation Number : CG32521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052521
Gbrowse : chrX:21080123-21152198 (-) // 100.0 //
Probeset : 1628820_at
Accessions : protein= NP_728397; /// NP_728398; /// NP_728399;, nucleotide= NM_167734; /// NM_167735; /// NM_167736;
FlyMine data for FBgn0052521.
VDRC has 3 RNAi stocks for FBgn0052521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 20 of 4 1.20None
Head18 ± 50 of 4 1.40None
Eye11 ± 20 of 4 0.94None
Thoracicoabdominal ganglion6 ± 10 of 4 0.50Down
Salivary gland11 ± 20 of 4 0.92None
Crop19 ± 40 of 4 1.60None
Midgut4 ± 10 of 4 0.30Down
Tubule2 ± 00 of 4 0.20Down
Hindgut10 ± 10 of 4 0.80None
Heart3 ± 00 of 4 0.29Down
Fat body8 ± 40 of 4 0.68None
Ovary33 ± 11 of 4 2.70Up
Testis1 ± 00 of 4 0.10Down
Male accessory glands6 ± 20 of 4 0.50None
Virgin spermatheca2 ± 00 of 4 0.23Down
Mated spermatheca4 ± 10 of 4 0.38Down
Adult carcass6 ± 10 of 4 0.50Down
Larval CNS8 ± 50 of 4 0.69None
Larval Salivary gland10 ± 30 of 4 0.81None
Larval midgut4 ± 00 of 4 0.36Down
Larval tubule3 ± 00 of 4 0.30Down
Larval hindgut11 ± 10 of 4 0.89None
Larval fat body23 ± 20 of 4 1.90Up
Larval trachea8 ± 20 of 4 0.67Down
Larval carcass34 ± 30 of 4 2.76Up
S2 cells (growing)114 ± 44 of 4 9.14Up
Whole fly12 ± 00 of 4



(CG32521):

Annotation Number : CG32521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052521
Gbrowse : chrX:21076336-21152198 (-) // 100.0 //
Probeset : 1634983_s_at
Accessions : protein= NP_728397; /// NP_728398; /// NP_728399;, nucleotide= NM_167734; /// NM_167735; /// NM_167736;
FlyMine data for FBgn0052521.
VDRC has 3 RNAi stocks for FBgn0052521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1034 ± 194 of 4 4.60Up
Head938 ± 604 of 4 4.20Up
Eye998 ± 84 of 4 4.46Up
Thoracicoabdominal ganglion1102 ± 464 of 4 4.90Up
Salivary gland749 ± 174 of 4 3.35Up
Crop255 ± 44 of 4 1.10None
Midgut25 ± 04 of 4 0.10Down
Tubule21 ± 33 of 4 0.10Down
Hindgut186 ± 64 of 4 0.80None
Heart945 ± 284 of 4 4.23Up
Fat body1630 ± 1494 of 4 7.29Up
Ovary52 ± 24 of 4 0.20Down
Testis21 ± 04 of 4 0.10Down
Male accessory glands53 ± 64 of 4 0.20Down
Virgin spermatheca1447 ± 394 of 4 6.47Up
Mated spermatheca1370 ± 514 of 4 6.12Up
Adult carcass875 ± 494 of 4 3.90Up
Larval CNS175 ± 234 of 4 0.78None
Larval Salivary gland39 ± 44 of 4 0.18Down
Larval midgut16 ± 22 of 4 0.07Down
Larval tubule37 ± 24 of 4 0.20Down
Larval hindgut101 ± 64 of 4 0.45Down
Larval fat body707 ± 1024 of 4 3.20Up
Larval trachea132 ± 144 of 4 0.59Down
Larval carcass72 ± 04 of 4 0.32Down
S2 cells (growing)826 ± 164 of 4 3.69Up
Whole fly223 ± 194 of 4

Looking for FBgn0052521. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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