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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052529 through 18771 annotations produced 1 hits



(CG32529):

Annotation Number : CG32529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052529
Gbrowse : chrX:19762442-19800720 (+) // 100.0 //
Probeset : 1628469_a_at
Accessions : protein= NP_001033855; /// NP_608360; /// NP_728309;, nucleotide= NM_001038766; /// NM_134516; /// NM_167688;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0052529.
VDRC has 4 RNAi stocks for FBgn0052529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain500 ± 224 of 4 6.80Up
Head144 ± 74 of 4 2.00Up
Eye116 ± 84 of 4 1.57Up
Thoracicoabdominal ganglion322 ± 144 of 4 4.40Up
Salivary gland153 ± 144 of 4 2.08Up
Crop157 ± 84 of 4 2.10Up
Midgut162 ± 94 of 4 2.20Up
Tubule204 ± 204 of 4 2.80Up
Hindgut196 ± 94 of 4 2.70Up
Heart168 ± 114 of 4 2.29Up
Fat body275 ± 284 of 4 3.73Up
Ovary70 ± 34 of 4 1.00None
Testis18 ± 14 of 4 0.20Down
Male accessory glands76 ± 54 of 4 1.00None
Virgin spermatheca176 ± 64 of 4 2.38Up
Mated spermatheca177 ± 84 of 4 2.40Up
Adult carcass139 ± 84 of 4 1.90Up
Larval CNS468 ± 274 of 4 6.34Up
Larval Salivary gland175 ± 154 of 4 2.38Up
Larval midgut128 ± 64 of 4 1.74Up
Larval tubule158 ± 84 of 4 2.10Up
Larval hindgut149 ± 64 of 4 2.03Up
Larval fat body46 ± 34 of 4 0.60Down
Larval trachea112 ± 94 of 4 1.53Up
Larval carcass125 ± 54 of 4 1.70Up
S2 cells (growing)799 ± 224 of 410.83Up
Whole fly73 ± 64 of 4

Looking for FBgn0052529. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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