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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052532 through 18771 annotations produced 1 hits


Annotation Number : CG32532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052532
Gbrowse : chrX:19426044-19441515 (-) // 100.0 //
Probeset : 1632869_at
Accessions : protein= NP_608318;, nucleotide= NM_134474;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
FlyMine data for FBgn0052532.
BDGP gene expression has embryonic in situ data for CG32532: 4 pix of staining in 1 body parts.
Homophila reports that CG32532 is a close match (1e-11) to human gene HESX1;RPX (NP_003856), a gene associated with Pituitary hormone deficiency, combined, HESX1-related, 182230 (3);Septooptic dysplasia, 182230 (3).
TRiP has 1 RNAi stocks for FBgn0052532 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052532 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 24 of 411.40Up
Head5 21 of 4 1.20None
Eye7 10 of 4 1.60None
Thoracicoabdominal ganglion5 00 of 4 1.30None
Salivary gland17 20 of 4 3.77Up
Crop5 10 of 4 1.20None
Midgut4 10 of 4 1.00None
Tubule4 00 of 4 1.10None
Hindgut6 10 of 4 1.50None
Heart4 11 of 4 0.92None
Fat body9 60 of 4 2.04None
Ovary3 10 of 4 0.80None
Testis3 10 of 4 0.80None
Male accessory glands15 12 of 4 3.50Up
Virgin spermatheca15 12 of 4 3.41Up
Mated spermatheca26 63 of 4 5.93Up
Adult carcass3 10 of 4 0.80None
Larval CNS60 14 of 413.43Up
Larval Salivary gland4 10 of 4 0.88None
Larval midgut9 10 of 4 2.12None
Larval tubule7 10 of 4 1.60None
Larval hindgut7 01 of 4 1.54None
Larval fat body11 41 of 4 2.60None
Larval trachea5 21 of 4 1.17None
Larval carcass6 10 of 4 1.40None
S2 cells (growing)10 02 of 4 2.22None
Whole fly4 20 of 4

Looking for FBgn0052532. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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