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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052537 through 18771 annotations produced 2 hits



(CG32537):

Annotation Number : CG32537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052537
Gbrowse : chrX:19167817-19168861 (-) // 100.0 //
Probeset : 1628626_at
Accessions : protein= NP_728236;, nucleotide= NM_167643;
FlyMine data for FBgn0052537.
VDRC has 2 RNAi stocks for FBgn0052537 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 1.30None
Head15 ± 11 of 4 0.80None
Eye16 ± 14 of 4 0.84None
Thoracicoabdominal ganglion13 ± 20 of 4 0.70None
Salivary gland18 ± 20 of 4 0.93None
Crop10 ± 30 of 4 0.60None
Midgut5 ± 10 of 4 0.30Down
Tubule14 ± 20 of 4 0.70None
Hindgut10 ± 20 of 4 0.50Down
Heart14 ± 22 of 4 0.74None
Fat body17 ± 30 of 4 0.88None
Ovary37 ± 24 of 4 1.90Up
Testis8 ± 10 of 4 0.40Down
Male accessory glands16 ± 50 of 4 0.80None
Virgin spermatheca6 ± 10 of 4 0.33Down
Mated spermatheca10 ± 10 of 4 0.55Down
Adult carcass16 ± 10 of 4 0.90None
Larval CNS22 ± 54 of 4 1.14None
Larval Salivary gland16 ± 23 of 4 0.85None
Larval midgut6 ± 00 of 4 0.34Down
Larval tubule14 ± 10 of 4 0.70None
Larval hindgut10 ± 10 of 4 0.52Down
Larval fat body13 ± 10 of 4 0.70None
Larval trachea13 ± 23 of 4 0.70None
Larval carcass9 ± 10 of 4 0.50Down
S2 cells (growing)46 ± 24 of 4 2.36Up
Whole fly19 ± 20 of 4



/// (CG32536 /// CG32537):

Annotation Number : CG32536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052536 /// FBgn0052537
Gbrowse : chrX:19169036-19170905 (-) // 100.0 //
Probeset : 1632739_at
Accessions : protein= NP_728237;, nucleotide= NM_167644;
FlyMine data for FBgn0052536 /// FBgn0052537.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 14 of 4 0.60Down
Head38 ± 54 of 4 0.90None
Eye56 ± 24 of 4 1.29Up
Thoracicoabdominal ganglion26 ± 14 of 4 0.60Down
Salivary gland49 ± 54 of 4 1.13None
Crop46 ± 14 of 4 1.10None
Midgut51 ± 24 of 4 1.20Up
Tubule21 ± 51 of 4 0.50Down
Hindgut37 ± 04 of 4 0.90Down
Heart51 ± 34 of 4 1.17None
Fat body69 ± 14 of 4 1.59Up
Ovary61 ± 24 of 4 1.40Up
Testis32 ± 34 of 4 0.70Down
Male accessory glands132 ± 94 of 4 3.00Up
Virgin spermatheca31 ± 14 of 4 0.71Down
Mated spermatheca38 ± 44 of 4 0.88None
Adult carcass44 ± 14 of 4 1.00None
Larval CNS29 ± 04 of 4 0.67Down
Larval Salivary gland101 ± 54 of 4 2.31Up
Larval midgut54 ± 54 of 4 1.24None
Larval tubule35 ± 24 of 4 0.80Down
Larval hindgut50 ± 14 of 4 1.15Up
Larval fat body38 ± 14 of 4 0.90None
Larval trachea48 ± 24 of 4 1.11None
Larval carcass32 ± 24 of 4 0.74Down
S2 cells (growing)53 ± 24 of 4 1.23Up
Whole fly43 ± 14 of 4

Looking for FBgn0052537. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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