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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052548 through 18771 annotations produced 1 hits


(CG32548):

Annotation Number : CG32548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052548
Gbrowse : chrX:18329747-18334614 (-) // 100.0 //
Probeset : 1639740_a_at
Accessions : protein= NP_573293; /// NP_728167;, nucleotide= NM_133065; /// NM_167617;
FlyMine data for FBgn0052548.
BDGP gene expression has embryonic in situ data for CG32548: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 20 of 4 0.10Down
Head18 ± 10 of 4 0.20Down
Eye8 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion11 ± 10 of 4 0.10Down
Salivary gland19 ± 40 of 4 0.16Down
Crop10 ± 30 of 4 0.10Down
Midgut15 ± 60 of 4 0.10Down
Tubule7 ± 00 of 4 0.10Down
Hindgut12 ± 40 of 4 0.10Down
Heart3 ± 00 of 4 0.02Down
Fat body19 ± 70 of 4 0.16Down
Ovary9 ± 00 of 4 0.10Down
Testis1188 ± 354 of 4 9.60Up
Male accessory glands18 ± 50 of 4 0.10Down
Virgin spermatheca13 ± 10 of 4 0.11Down
Mated spermatheca19 ± 30 of 4 0.16Down
Adult carcass32 ± 60 of 4 0.30Down
Larval CNS10 ± 50 of 4 0.09Down
Larval Salivary gland8 ± 30 of 4 0.07Down
Larval midgut14 ± 50 of 4 0.11Down
Larval tubule14 ± 40 of 4 0.10Down
Larval hindgut17 ± 10 of 4 0.14Down
Larval fat body167 ± 741 of 4 1.40None
Larval trachea15 ± 161 of 4 0.12Down
Larval carcass35 ± 70 of 4 0.28Down
S2 cells (growing)10 ± 10 of 4 0.09Down
Whole fly123 ± 34 of 4

Looking for FBgn0052548. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime