FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052554 through 18771 annotations produced 1 hits

(CG32554):

Annotation Number : CG32554
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052554
Gbrowse : chrX:17745920-17746640 (-) // 100.0 //
Probeset : 1628802_at
Accessions : protein= NP_728102;, nucleotide= NM_167580;
FlyMine data for FBgn0052554.
VDRC has 2 RNAi stocks for FBgn0052554 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 2	3 of 4	0.70	Down
Head	17 ± 1	0 of 4	0.60	Down
Eye	23 ± 2	4 of 4	0.76	None
Thoracicoabdominal ganglion	23 ± 2	2 of 4	0.80	None
Salivary gland	28 ± 2	0 of 4	0.93	None
Crop	24 ± 2	0 of 4	0.80	None
Midgut	24 ± 2	0 of 4	0.80	None
Tubule	18 ± 1	0 of 4	0.60	Down
Hindgut	21 ± 2	0 of 4	0.70	Down
Heart	15 ± 1	2 of 4	0.51	Down
Fat body	14 ± 1	0 of 4	0.47	Down
Ovary	37 ± 2	4 of 4	1.20	None
Testis	32 ± 1	4 of 4	1.10	None
Male accessory glands	26 ± 4	0 of 4	0.90	None
Virgin spermatheca	17 ± 1	0 of 4	0.58	Down
Mated spermatheca	23 ± 3	0 of 4	0.77	None
Adult carcass	8 ± 3	0 of 4	0.30	Down
Larval CNS	36 ± 4	4 of 4	1.21	None
Larval Salivary gland	56 ± 1	4 of 4	1.85	Up
Larval midgut	22 ± 4	0 of 4	0.72	None
Larval tubule	24 ± 1	3 of 4	0.80	Down
Larval hindgut	19 ± 2	0 of 4	0.63	Down
Larval fat body	15 ± 3	0 of 4	0.50	Down
Larval trachea	43 ± 11	4 of 4	1.42	None
Larval carcass	20 ± 2	0 of 4	0.67	Down
S2 cells (growing)	22 ± 1	2 of 4	0.74	Down
Whole fly	30 ± 1	1 of 4

Looking for FBgn0052554. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720