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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052563 through 18771 annotations produced 1 hits



(CG32563):

Annotation Number : CG32563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052563
Gbrowse : chrX:17102468-17103042 (+) // 100.0 //
Probeset : 1637751_at
Accessions : protein= NP_728057;, nucleotide= NM_167560;
FlyMine data for FBgn0052563.
VDRC has 1 RNAi stocks for FBgn0052563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head2 ± 00 of 4 0.60None
Eye4 ± 20 of 4 1.05None
Thoracicoabdominal ganglion0 ± 00 of 4 0.20Down
Salivary gland4 ± 10 of 4 1.13None
Crop3 ± 10 of 4 0.70None
Midgut5 ± 10 of 4 1.30None
Tubule3 ± 10 of 4 0.90None
Hindgut62 ± 34 of 414.60Up
Heart2 ± 10 of 4 0.51None
Fat body7 ± 51 of 4 1.85None
Ovary2 ± 00 of 4 0.60None
Testis2 ± 00 of 4 0.50None
Male accessory glands5 ± 10 of 4 1.30None
Virgin spermatheca4 ± 00 of 4 1.06None
Mated spermatheca4 ± 10 of 4 0.98None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS0 ± 00 of 4 0.18Down
Larval Salivary gland4 ± 10 of 4 1.01None
Larval midgut1 ± 00 of 4 0.23None
Larval tubule4 ± 20 of 4 1.00None
Larval hindgut18 ± 14 of 4 4.22Up
Larval fat body9 ± 50 of 4 2.20None
Larval trachea5 ± 50 of 4 1.34None
Larval carcass2 ± 00 of 4 0.67None
S2 cells (growing)1 ± 00 of 4 0.23None
Whole fly4 ± 10 of 4

Looking for FBgn0052563. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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