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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052564 through 18771 annotations produced 1 hits



(CG32564):

Annotation Number : CG32564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052564
Gbrowse : chrX:17100452-17101887 (+) // 100.0 //
Probeset : 1633772_at
Accessions : protein= NP_728056;, nucleotide= NM_167559;
FlyMine data for FBgn0052564.
BDGP gene expression has embryonic in situ data for CG32564: 26 pix of staining in 4 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.20Down
Head4 ± 10 of 4 0.10Down
Eye5 ± 12 of 4 0.15Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.20Down
Salivary gland12 ± 30 of 4 0.32Down
Crop13 ± 41 of 4 0.30Down
Midgut2 ± 00 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut1917 ± 384 of 449.60Up
Heart11 ± 12 of 4 0.29Down
Fat body11 ± 50 of 4 0.28Down
Ovary5 ± 10 of 4 0.10Down
Testis6 ± 10 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca7 ± 01 of 4 0.19Down
Mated spermatheca10 ± 21 of 4 0.27Down
Adult carcass6 ± 30 of 4 0.20Down
Larval CNS5 ± 10 of 4 0.15Down
Larval Salivary gland21 ± 41 of 4 0.54Down
Larval midgut20 ± 20 of 4 0.52Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut4158 ± 3904 of 4107.59Up
Larval fat body11 ± 11 of 4 0.30Down
Larval trachea203 ± 914 of 4 5.28Up
Larval carcass150 ± 484 of 4 3.88None
S2 cells (growing)10 ± 03 of 4 0.27Down
Whole fly38 ± 44 of 4

Looking for FBgn0052564. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime