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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052568 through 18771 annotations produced 1 hits



(CG32568):

Annotation Number : CG32568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052568
Gbrowse : chrX:16634968-16636209 (+) // 100.0 //
Probeset : 1634079_at
Accessions : protein= NP_728019;, nucleotide= NM_167542;
Pathway : 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008601 // protein phosphatase type 2A regulator activity
FlyMine data for FBgn0052568.
TRiP has 1 RNAi stocks for FBgn0052568 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052568 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye9 ± 13 of 4 0.25Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.23Down
Crop9 ± 12 of 4 0.30Down
Midgut6 ± 10 of 4 0.20Down
Tubule7 ± 00 of 4 0.20Down
Hindgut4 ± 11 of 4 0.10Down
Heart6 ± 12 of 4 0.18Down
Fat body25 ± 74 of 4 0.66None
Ovary1 ± 00 of 4 0.00Down
Testis508 ± 244 of 413.50Up
Male accessory glands6 ± 10 of 4 0.20Down
Virgin spermatheca24 ± 24 of 4 0.66None
Mated spermatheca21 ± 53 of 4 0.57None
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS12 ± 54 of 4 0.34Down
Larval Salivary gland4 ± 20 of 4 0.12Down
Larval midgut2 ± 00 of 4 0.06Down
Larval tubule7 ± 11 of 4 0.20Down
Larval hindgut5 ± 10 of 4 0.14Down
Larval fat body121 ± 683 of 4 3.20None
Larval trachea9 ± 72 of 4 0.26Down
Larval carcass3 ± 10 of 4 0.09Down
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly37 ± 54 of 4

Looking for FBgn0052568. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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