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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052573 through 18771 annotations produced 1 hits



/// CG42528 (CG32573 /// CG42512):

Annotation Number : CG32573
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052573 /// FBgn0260238
Gbrowse : chrX:16545408-16548063 (+) // 100.0 //
Probeset : 1628102_a_at
Accessions : protein= NP_001162775; /// NP_001162776; /// NP_727997;, nucleotide= NM_001169304; /// NM_001169305; /// NM_167529;
FlyMine data for FBgn0052573 /// FBgn0260238.
BioGrid reports that CG32573 interacts with CG4167 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 2.10None
Head4 ± 10 of 4 4.50None
Eye2 ± 10 of 4 2.21None
Thoracicoabdominal ganglion6 ± 20 of 4 5.90None
Salivary gland9 ± 40 of 4 8.76None
Crop7 ± 20 of 4 6.80None
Midgut1 ± 00 of 4 1.80None
Tubule2 ± 00 of 4 2.60Up
Hindgut3 ± 00 of 4 3.20None
Heart7 ± 10 of 4 6.98Up
Fat body5 ± 40 of 4 4.81None
Ovary5 ± 00 of 4 5.10Up
Testis5 ± 10 of 4 4.90None
Male accessory glands15 ± 40 of 414.30Up
Virgin spermatheca3 ± 10 of 4 2.86None
Mated spermatheca4 ± 20 of 4 4.52None
Adult carcass5 ± 30 of 4 5.40None
Larval CNS7 ± 20 of 4 7.33Up
Larval Salivary gland16 ± 30 of 415.60Up
Larval midgut10 ± 20 of 4 9.50Up
Larval tubule5 ± 20 of 4 4.70None
Larval hindgut7 ± 20 of 4 6.76None
Larval fat body7 ± 20 of 4 7.20None
Larval trachea6 ± 30 of 4 6.55Up
Larval carcass12 ± 10 of 411.83Up
S2 cells (growing)9 ± 10 of 4 8.71Up
Whole fly1 ± 00 of 4

Looking for FBgn0052573. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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