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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052574 through 18771 annotations produced 1 hits



CG32574 (Twdlalpha):

Annotation Number : CG32574
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052574
Gbrowse : chrX:16636955-16638400 (+) // 100.0 //
Probeset : 1638788_at
Accessions : protein= NP_728020;, nucleotide= NM_167543;
FlyMine data for FBgn0052574.
VDRC has 1 RNAi stocks for FBgn0052574 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head2 ± 10 of 4 0.20Down
Eye2 ± 10 of 4 0.17Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland3 ± 00 of 4 0.30Down
Crop1 ± 00 of 4 0.10Down
Midgut4 ± 10 of 4 0.30Down
Tubule2 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.40Down
Heart1 ± 00 of 4 0.11Down
Fat body5 ± 20 of 4 0.41Down
Ovary0 ± 00 of 4 0.10Down
Testis266 ± 64 of 420.70Up
Male accessory glands5 ± 20 of 4 0.40Down
Virgin spermatheca1 ± 00 of 4 0.10Down
Mated spermatheca3 ± 10 of 4 0.28Down
Adult carcass5 ± 10 of 4 0.40Down
Larval CNS1 ± 10 of 4 0.14Down
Larval Salivary gland1 ± 00 of 4 0.10Down
Larval midgut9 ± 10 of 4 0.75None
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.38Down
Larval fat body31 ± 162 of 4 2.40None
Larval trachea1 ± 00 of 4 0.08Down
Larval carcass1 ± 00 of 4 0.14Down
S2 cells (growing)1 ± 00 of 4 0.09Down
Whole fly12 ± 11 of 4

Looking for FBgn0052574. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime