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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052579 through 18771 annotations produced 1 hits


Annotation Number : CG32579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052579
Gbrowse : chrX:16217320-16219153 (+) // 100.0 //
Probeset : 1634329_at
Accessions : protein= NP_727957;, nucleotide= NM_167501;
FlyMine data for FBgn0052579.
VDRC has 3 RNAi stocks for FBgn0052579 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 0.10Down
Head52 44 of 4 0.50Down
Eye44 34 of 4 0.42Down
Thoracicoabdominal ganglion19 14 of 4 0.20Down
Salivary gland38 43 of 4 0.36Down
Crop76 24 of 4 0.70None
Midgut28 24 of 4 0.30Down
Tubule65 74 of 4 0.60Down
Hindgut40 34 of 4 0.40Down
Heart84 24 of 4 0.79None
Fat body118 104 of 4 1.11None
Ovary265 124 of 4 2.50Up
Testis12 14 of 4 0.10Down
Male accessory glands34 33 of 4 0.30Down
Virgin spermatheca107 74 of 4 1.01None
Mated spermatheca129 194 of 4 1.22None
Adult carcass100 14 of 4 0.90None
Larval CNS31 44 of 4 0.30Down
Larval Salivary gland45 24 of 4 0.43Down
Larval midgut31 14 of 4 0.29Down
Larval tubule99 34 of 4 0.90None
Larval hindgut41 24 of 4 0.39Down
Larval fat body168 224 of 4 1.60None
Larval trachea94 114 of 4 0.89None
Larval carcass70 64 of 4 0.66Down
S2 cells (growing)172 24 of 4 1.62Up
Whole fly106 114 of 4

Looking for FBgn0052579. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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