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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052581 through 18771 annotations produced 1 hits



/// (CG32581 /// CG8974):

Annotation Number : CG32581
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030693 /// FBgn0052581
Gbrowse : chrX:15691505-15693189 (-) // 100.0 // /// chrX:15688335-15690055 (-) // 99.44 //
Probeset : 1628101_s_at
Accessions : protein= NP_001096988; /// NP_573076; /// NP_727896; /// NP_727897; /// NP_727898; /// NP_996448; /// NP_996449;, nucleotide= NM_001103518; /// NM_132848; /// NM_167462; /// NM_167463; /// NM_167464; /// NM_206725; /// NM_206726;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0030693 /// FBgn0052581.
BioGrid reports that CG32581 interacts with CG6720 CG7220 CG7425 CG8284 CG3509 CG3725 CG4756 CG5359 CG6126 CG6510 CG6779 CG7967 CG8910 Dmel CR11700 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain867 ± 234 of 4 1.80Up
Head1058 ± 554 of 4 2.20Up
Eye1623 ± 384 of 4 3.40Up
Thoracicoabdominal ganglion614 ± 184 of 4 1.30Up
Salivary gland1509 ± 514 of 4 3.16Up
Crop1602 ± 194 of 4 3.40Up
Midgut864 ± 154 of 4 1.80Up
Tubule260 ± 154 of 4 0.50Down
Hindgut1408 ± 144 of 4 3.00Up
Heart728 ± 304 of 4 1.53Up
Fat body551 ± 1534 of 4 1.16None
Ovary417 ± 114 of 4 0.90None
Testis524 ± 234 of 4 1.10None
Male accessory glands464 ± 264 of 4 1.00None
Virgin spermatheca132 ± 34 of 4 0.28Down
Mated spermatheca112 ± 84 of 4 0.24Down
Adult carcass629 ± 154 of 4 1.30Up
Larval CNS308 ± 154 of 4 0.65Down
Larval Salivary gland620 ± 694 of 4 1.30None
Larval midgut284 ± 64 of 4 0.60Down
Larval tubule988 ± 184 of 4 2.10Up
Larval hindgut476 ± 24 of 4 1.00None
Larval fat body856 ± 514 of 4 1.80Up
Larval trachea562 ± 624 of 4 1.18None
Larval carcass230 ± 224 of 4 0.48Down
S2 cells (growing)626 ± 134 of 4 1.31Up
Whole fly477 ± 294 of 4

Looking for FBgn0052581. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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