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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052590 through 18771 annotations produced 1 hits



(CG32590):

Annotation Number : CG32590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052590
Gbrowse : chrX:14732294-14733068 (-) // 100.0 //
Probeset : 1640603_at
Accessions : protein= NP_727796;, nucleotide= NM_167414;
FlyMine data for FBgn0052590.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 ± 44 of 4 2.10Up
Head57 ± 54 of 4 1.00None
Eye95 ± 34 of 4 1.68Up
Thoracicoabdominal ganglion141 ± 84 of 4 2.50Up
Salivary gland52 ± 34 of 4 0.93None
Crop57 ± 74 of 4 1.00None
Midgut31 ± 34 of 4 0.60Down
Tubule43 ± 34 of 4 0.80Down
Hindgut34 ± 24 of 4 0.60Down
Heart47 ± 24 of 4 0.84None
Fat body25 ± 54 of 4 0.44Down
Ovary120 ± 14 of 4 2.10Up
Testis10 ± 12 of 4 0.20Down
Male accessory glands28 ± 23 of 4 0.50Down
Virgin spermatheca35 ± 14 of 4 0.62Down
Mated spermatheca49 ± 34 of 4 0.87None
Adult carcass22 ± 43 of 4 0.40Down
Larval CNS129 ± 54 of 4 2.28Up
Larval Salivary gland39 ± 14 of 4 0.69Down
Larval midgut26 ± 24 of 4 0.47Down
Larval tubule50 ± 24 of 4 0.90None
Larval hindgut27 ± 14 of 4 0.49Down
Larval fat body28 ± 24 of 4 0.50Down
Larval trachea73 ± 124 of 4 1.29None
Larval carcass29 ± 24 of 4 0.52Down
S2 cells (growing)67 ± 24 of 4 1.19None
Whole fly56 ± 34 of 4

Looking for FBgn0052590. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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