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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052591 through 18771 annotations produced 1 hits


Annotation Number : CG32591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052591
Gbrowse : chrX:14821629-14822977 (-) // 100.0 //
Probeset : 1636666_at
Accessions : protein= NP_727813;, nucleotide= NM_167420;
FlyMine data for FBgn0052591.
VDRC has 2 RNAi stocks for FBgn0052591 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 0.10Down
Head13 20 of 4 0.20Down
Eye9 01 of 4 0.13Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland26 60 of 4 0.34Down
Crop5 20 of 4 0.10Down
Midgut8 10 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut3 10 of 4 0.00Down
Heart5 00 of 4 0.07Down
Fat body11 70 of 4 0.15Down
Ovary4 00 of 4 0.10Down
Testis722 214 of 4 9.40Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca6 10 of 4 0.08Down
Mated spermatheca5 10 of 4 0.07Down
Adult carcass12 10 of 4 0.20Down
Larval CNS6 10 of 4 0.08Down
Larval Salivary gland8 20 of 4 0.10Down
Larval midgut12 20 of 4 0.17Down
Larval tubule7 20 of 4 0.10Down
Larval hindgut6 20 of 4 0.08Down
Larval fat body106 502 of 4 1.40None
Larval trachea9 61 of 4 0.12Down
Larval carcass4 10 of 4 0.06Down
S2 cells (growing)3 10 of 4 0.05Down
Whole fly76 64 of 4

Looking for FBgn0052591. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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