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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052602 through 18771 annotations produced 1 hits

Mucin 12Ea (Muc12Ea):

Annotation Number : CG32602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052602
Gbrowse : chrX:14171861-14182073 (+) // 86.95 //
Probeset : 1637929_a_at
Accessions : protein= NP_727774;, nucleotide= NM_167403;
FlyMine data for FBgn0052602.
VDRC has 3 RNAi stocks for FBgn0052602 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 24 of 4 0.00Down
Head5 11 of 4 0.00Down
Eye5 01 of 4 0.01Down
Thoracicoabdominal ganglion15 23 of 4 0.00Down
Salivary gland17 50 of 4 0.02Down
Crop9 12 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule5 00 of 4 0.00Down
Hindgut6 10 of 4 0.00Down
Heart3 11 of 4 0.00Down
Fat body18 23 of 4 0.02Down
Ovary1218 1024 of 4 1.60None
Testis7 14 of 4 0.00Down
Male accessory glands8 20 of 4 0.00Down
Virgin spermatheca9 01 of 4 0.01Down
Mated spermatheca9 23 of 4 0.01Down
Adult carcass12 41 of 4 0.00Down
Larval CNS9 33 of 4 0.01Down
Larval Salivary gland2 10 of 4 0.00Down
Larval midgut3 10 of 4 0.00Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut9 03 of 4 0.01Down
Larval fat body4 00 of 4 0.00Down
Larval trachea3 20 of 4 0.00Down
Larval carcass2 10 of 4 0.00Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly762 1694 of 4

Looking for FBgn0052602. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime