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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052603 through 18771 annotations produced 2 hits



(CG32603):

Annotation Number : CG32603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052603
Gbrowse : chrX:14078573-14079769 (+) // 100.0 //
Probeset : 1632685_at
Accessions : protein= NP_727758;, nucleotide= NM_167394;
FlyMine data for FBgn0052603.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.90None
Head21 ± 30 of 4 8.80Up
Eye19 ± 82 of 4 8.05None
Thoracicoabdominal ganglion3 ± 10 of 4 1.30None
Salivary gland37 ± 132 of 415.19None
Crop5 ± 20 of 4 2.40None
Midgut19 ± 90 of 4 8.00None
Tubule5 ± 10 of 4 2.10None
Hindgut4 ± 00 of 4 1.90None
Heart2 ± 10 of 4 1.16None
Fat body6 ± 50 of 4 2.80None
Ovary2 ± 00 of 4 1.00None
Testis11 ± 20 of 4 4.60Up
Male accessory glands7 ± 40 of 4 2.90None
Virgin spermatheca2 ± 10 of 4 1.12None
Mated spermatheca3 ± 00 of 4 1.26None
Adult carcass18 ± 60 of 4 7.40None
Larval CNS4 ± 30 of 4 1.94None
Larval Salivary gland33 ± 40 of 413.62Up
Larval midgut17 ± 20 of 4 6.94Up
Larval tubule2 ± 00 of 4 0.90None
Larval hindgut236 ± 694 of 496.47Up
Larval fat body4 ± 10 of 4 1.70None
Larval trachea2325 ± 6164 of 4949.16Up
Larval carcass3834 ± 3434 of 41565.04Up
S2 cells (growing)2 ± 00 of 4 1.03None
Whole fly2 ± 00 of 4



(CG32603):

Annotation Number : CG32603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052603
Gbrowse : chrX:14078573-14079769 (+) // 100.0 //
Probeset : 1633474_x_at
Accessions : protein= NP_727758;, nucleotide= NM_167394;
FlyMine data for FBgn0052603.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 20 of 4 1.40None
Head27 ± 40 of 4 5.50Up
Eye25 ± 92 of 4 5.02None
Thoracicoabdominal ganglion4 ± 00 of 4 0.80None
Salivary gland26 ± 50 of 4 5.23Up
Crop6 ± 10 of 4 1.30None
Midgut25 ± 80 of 4 5.10None
Tubule10 ± 10 of 4 2.10Up
Hindgut9 ± 40 of 4 1.90None
Heart2 ± 00 of 4 0.53None
Fat body3 ± 00 of 4 0.71None
Ovary5 ± 10 of 4 1.10None
Testis9 ± 30 of 4 2.00None
Male accessory glands6 ± 10 of 4 1.20None
Virgin spermatheca1 ± 00 of 4 0.33Down
Mated spermatheca3 ± 00 of 4 0.65None
Adult carcass9 ± 30 of 4 1.90None
Larval CNS2 ± 10 of 4 0.53Down
Larval Salivary gland33 ± 50 of 4 6.74Up
Larval midgut21 ± 80 of 4 4.22None
Larval tubule6 ± 10 of 4 1.30None
Larval hindgut326 ± 1084 of 464.91None
Larval fat body13 ± 60 of 4 2.80None
Larval trachea2333 ± 5074 of 4464.42Up
Larval carcass3895 ± 3644 of 4775.20Up
S2 cells (growing)3 ± 00 of 4 0.76None
Whole fly5 ± 00 of 4

Looking for FBgn0052603. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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