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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052625 through 18771 annotations produced 1 hits



(CG32625):

Annotation Number : CG32625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052625
Gbrowse : chrX:13650196-13650836 (-) // 99.13 //
Probeset : 1623296_at
Accessions : protein= NP_727732;, nucleotide= NM_167381;
FlyMine data for FBgn0052625.
BDGP gene expression has embryonic in situ data for CG32625: 16 pix of staining in 15 body parts.
VDRC has 1 RNAi stocks for FBgn0052625 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 0.10Down
Head4 ± 10 of 4 0.00Down
Eye5 ± 21 of 4 0.05Down
Thoracicoabdominal ganglion7 ± 13 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.07Down
Crop6 ± 21 of 4 0.10Down
Midgut3 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut4 ± 11 of 4 0.00Down
Heart3 ± 10 of 4 0.03Down
Fat body7 ± 11 of 4 0.07Down
Ovary250 ± 124 of 4 2.30Up
Testis40 ± 24 of 4 0.40None
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 20 of 4 0.05Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass10 ± 11 of 4 0.10Down
Larval CNS21 ± 54 of 4 0.20Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.04Down
Larval tubule4 ± 12 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body16 ± 52 of 4 0.20Down
Larval trachea6 ± 21 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)280 ± 104 of 4 2.62Up
Whole fly106 ± 244 of 4

Looking for FBgn0052625. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime