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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052636 through 18771 annotations produced 1 hits



():

Annotation Number : CG32636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:13226406-13227891 (+) // 100.0 //
Probeset : 1625207_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.70None
Head5 11 of 4 1.30None
Eye14 24 of 4 3.34Up
Thoracicoabdominal ganglion3 10 of 4 0.80None
Salivary gland56 24 of 412.80Up
Crop15 10 of 4 3.60Up
Midgut31 24 of 4 7.20Up
Tubule27 43 of 4 6.20Up
Hindgut12 20 of 4 2.90Up
Heart9 21 of 4 2.09None
Fat body12 10 of 4 2.78Up
Ovary1 00 of 4 0.30None
Testis3 10 of 4 0.80None
Male accessory glands29 24 of 4 6.70Up
Virgin spermatheca17 04 of 4 3.94Up
Mated spermatheca22 53 of 4 5.06Up
Adult carcass9 30 of 4 2.10None
Larval CNS5 10 of 4 1.33None
Larval Salivary gland29 34 of 4 6.76Up
Larval midgut8 00 of 4 2.00None
Larval tubule4 10 of 4 1.00None
Larval hindgut5 10 of 4 1.14None
Larval fat body6 20 of 4 1.40None
Larval trachea6 20 of 4 1.36None
Larval carcass3 10 of 4 0.86None
S2 cells (growing)16 02 of 4 3.81Up
Whole fly4 11 of 4

Looking for FBgn0052636. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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