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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052639 through 18771 annotations produced 1 hits


Annotation Number : CG32639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052639
Gbrowse : chrX:13130127-13130556 (-) // 100.0 //
Probeset : 1630581_at
Accessions : protein= NP_727680;, nucleotide= NM_167355;
FlyMine data for FBgn0052639.
VDRC has 3 RNAi stocks for FBgn0052639 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head0 00 of 4 0.20Down
Eye1 00 of 4 0.40None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland11 50 of 4 3.28None
Crop5 11 of 4 1.70None
Midgut7 20 of 4 2.20None
Tubule5 00 of 4 1.50Up
Hindgut8 00 of 4 2.40Up
Heart13 24 of 4 3.69Up
Fat body4 20 of 4 1.26None
Ovary0 00 of 4 0.20Down
Testis36 44 of 410.40Up
Male accessory glands5 20 of 4 1.50None
Virgin spermatheca2 00 of 4 0.65None
Mated spermatheca3 10 of 4 0.96None
Adult carcass4 10 of 4 1.30None
Larval CNS2 10 of 4 0.74None
Larval Salivary gland9 10 of 4 2.77Up
Larval midgut4 00 of 4 1.23None
Larval tubule1 00 of 4 0.30None
Larval hindgut2 10 of 4 0.74None
Larval fat body7 21 of 4 2.00None
Larval trachea8 22 of 4 2.48Up
Larval carcass2 00 of 4 0.82None
S2 cells (growing)1 00 of 4 0.40None
Whole fly3 00 of 4

Looking for FBgn0052639. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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