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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052647 through 18771 annotations produced 1 hits



(CG32647):

Annotation Number : CG32647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052647
Gbrowse : chrX:12670604-12678991 (-) // 100.0 //
Probeset : 1624717_s_at
Accessions : protein= NP_727642; /// NP_727643;, nucleotide= NM_167338; /// NM_167339;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0052647.
BDGP gene expression has embryonic in situ data for CG32647: 4 pix of staining in 1 body parts.
BioGrid reports that CG32647 interacts with CG5494 CG5933 CG9986 .
VDRC has 3 RNAi stocks for FBgn0052647 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain851 264 of 4 3.30Up
Head881 524 of 4 3.40Up
Eye1597 574 of 4 6.11Up
Thoracicoabdominal ganglion1040 274 of 4 4.00Up
Salivary gland22 70 of 4 0.09Down
Crop135 134 of 4 0.50Down
Midgut7 20 of 4 0.00Down
Tubule13 00 of 4 0.10Down
Hindgut193 54 of 4 0.70Down
Heart627 594 of 4 2.40Up
Fat body1027 894 of 4 3.93Up
Ovary4 10 of 4 0.00Down
Testis13 04 of 4 0.10Down
Male accessory glands6 30 of 4 0.00Down
Virgin spermatheca476 194 of 4 1.82Up
Mated spermatheca310 254 of 4 1.19None
Adult carcass754 264 of 4 2.90Up
Larval CNS116 34 of 4 0.45Down
Larval Salivary gland3 10 of 4 0.01Down
Larval midgut8 30 of 4 0.03Down
Larval tubule8 10 of 4 0.00Down
Larval hindgut14 20 of 4 0.06Down
Larval fat body231 84 of 4 0.90None
Larval trachea19 262 of 4 0.07Down
Larval carcass4 10 of 4 0.02Down
S2 cells (growing)63 24 of 4 0.24Down
Whole fly261 154 of 4

Looking for FBgn0052647. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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