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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052649 through 18771 annotations produced 1 hits


Annotation Number : CG32649
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052649
Gbrowse : chrX:12792798-12795109 (-) // 100.0 //
Probeset : 1637405_at
Accessions : protein= NP_572836;, nucleotide= NM_132608;
Pathway : ubiquinol to cytochrome c // inferred from sequence or structural similarity"
Interpro : 0005739 // mitochondrion // inferred from sequence or structural similarity
FlyMine data for FBgn0052649.
Homophila reports that CG32649 is a close match (3e-124) to human gene ADCK3;ARCA2;CABC1;COQ8;SCAR9 (NP_064632), a gene associated with Coenzyme Q10 deficiency, 607426 (3);Spinocerebellar ataxia, autosomal recessive 9, 612016 (3).
TRiP has 1 RNAi stocks for FBgn0052649 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052649 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 24 of 4 0.60Down
Head107 104 of 4 1.10None
Eye46 14 of 4 0.47Down
Thoracicoabdominal ganglion64 44 of 4 0.60Down
Salivary gland121 84 of 4 1.22None
Crop215 104 of 4 2.10Up
Midgut85 64 of 4 0.90None
Tubule74 34 of 4 0.70Down
Hindgut296 44 of 4 3.00Up
Heart88 44 of 4 0.88None
Fat body111 224 of 4 1.12None
Ovary77 44 of 4 0.80None
Testis14 14 of 4 0.10Down
Male accessory glands76 34 of 4 0.80None
Virgin spermatheca28 34 of 4 0.29Down
Mated spermatheca34 34 of 4 0.34Down
Adult carcass237 94 of 4 2.40Up
Larval CNS38 74 of 4 0.39Down
Larval Salivary gland39 14 of 4 0.40Down
Larval midgut75 54 of 4 0.75None
Larval tubule45 04 of 4 0.50Down
Larval hindgut180 144 of 4 1.80Up
Larval fat body30 43 of 4 0.30Down
Larval trachea50 34 of 4 0.51Down
Larval carcass156 124 of 4 1.57Up
S2 cells (growing)81 14 of 4 0.81None
Whole fly100 84 of 4

Looking for FBgn0052649. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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