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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052651 through 18771 annotations produced 1 hits



(CG32651):

Annotation Number : CG32651
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052651
Gbrowse : chrX:12300581-12302438 (-) // 100.0 //
Probeset : 1639344_at
Accessions : protein= NP_727605;, nucleotide= NM_167321;
FlyMine data for FBgn0052651.
VDRC has 2 RNAi stocks for FBgn0052651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland6 ± 10 of 4 0.65None
Crop1 ± 00 of 4 0.20Down
Midgut0 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.20Down
Heart0 ± 00 of 4 0.04Down
Fat body8 ± 62 of 4 0.90None
Ovary1 ± 00 of 4 0.10Down
Testis83 ± 94 of 4 9.00Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.54Down
Mated spermatheca5 ± 20 of 4 0.53None
Adult carcass3 ± 20 of 4 0.40None
Larval CNS1 ± 20 of 4 0.17Down
Larval Salivary gland2 ± 00 of 4 0.26Down
Larval midgut1 ± 00 of 4 0.10Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.18Down
Larval fat body21 ± 92 of 4 2.30None
Larval trachea0 ± 00 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.13Down
S2 cells (growing)0 ± 00 of 4 0.07Down
Whole fly9 ± 04 of 4

Looking for FBgn0052651. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime