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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052654 through 18771 annotations produced 1 hits



CG32654 (Sec16):

Annotation Number : CG32654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052654
Gbrowse : chrX:12491385-12503958 (+) // 100.0 //
Probeset : 1624353_at
Accessions : protein= NP_001096963; /// NP_001096964;, nucleotide= NM_001103493; /// NM_001103494;
Pathway : 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0044432 // endoplasmic reticulum part // inf
FlyMine data for FBgn0052654.
BioGrid reports that CG32654 interacts with CG40127 CG4087 CG4863 CG8414 CG8857 CG8965 CG9075 CG9149 CG9553 .
VDRC has 2 RNAi stocks for FBgn0052654 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain399 144 of 4 1.80Up
Head185 74 of 4 0.80Down
Eye174 74 of 4 0.77Down
Thoracicoabdominal ganglion321 154 of 4 1.40Up
Salivary gland547 734 of 4 2.42Up
Crop213 44 of 4 0.90None
Midgut313 84 of 4 1.40Up
Tubule261 64 of 4 1.20Up
Hindgut267 84 of 4 1.20Up
Heart194 154 of 4 0.86None
Fat body380 374 of 4 1.68Up
Ovary568 104 of 4 2.50Up
Testis47 44 of 4 0.20Down
Male accessory glands527 254 of 4 2.30Up
Virgin spermatheca169 154 of 4 0.75Down
Mated spermatheca186 44 of 4 0.83Down
Adult carcass187 244 of 4 0.80None
Larval CNS315 544 of 4 1.40Up
Larval Salivary gland1483 794 of 4 6.56Up
Larval midgut421 184 of 4 1.86Up
Larval tubule466 194 of 4 2.10Up
Larval hindgut379 44 of 4 1.68Up
Larval fat body415 284 of 4 1.80Up
Larval trachea238 304 of 4 1.06None
Larval carcass437 244 of 4 1.93Up
S2 cells (growing)204 134 of 4 0.90None
Whole fly226 124 of 4

Looking for FBgn0052654. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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