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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052670 through 18771 annotations produced 1 hits



CG32670 (Rab9Fb):

Annotation Number : CG32670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052670
Gbrowse : chrX:10845807-10846452 (-) // 100.0 //
Probeset : 1631140_at
Accessions : protein= NP_727472;, nucleotide= NM_167261;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0052670.
Homophila reports that CG32670 is a close match (5e-13) to human gene RRAS2;TC21 (NP_036382), a gene associated with Ovarian carcinoma (3).
TRiP has 1 RNAi stocks for FBgn0052670 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head3 ± 11 of 4 0.40Down
Eye2 ± 00 of 4 0.27Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland3 ± 10 of 4 0.41Down
Crop2 ± 10 of 4 0.30Down
Midgut2 ± 00 of 4 0.30Down
Tubule3 ± 10 of 4 0.30Down
Hindgut2 ± 00 of 4 0.30Down
Heart1 ± 00 of 4 0.17Down
Fat body3 ± 30 of 4 0.36Down
Ovary2 ± 10 of 4 0.30Down
Testis104 ± 24 of 410.90Up
Male accessory glands2 ± 10 of 4 0.20Down
Virgin spermatheca4 ± 20 of 4 0.48None
Mated spermatheca3 ± 10 of 4 0.32Down
Adult carcass7 ± 20 of 4 0.80None
Larval CNS1 ± 10 of 4 0.15Down
Larval Salivary gland3 ± 10 of 4 0.39Down
Larval midgut6 ± 10 of 4 0.65None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut4 ± 00 of 4 0.45Down
Larval fat body18 ± 71 of 4 1.90None
Larval trachea2 ± 31 of 4 0.27Down
Larval carcass3 ± 00 of 4 0.36Down
S2 cells (growing)1 ± 00 of 4 0.15Down
Whole fly9 ± 04 of 4

Looking for FBgn0052670. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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