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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052675 through 18771 annotations produced 1 hits



Transport and Golgi organization 5 (Tango5):

Annotation Number : CG32675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052675
Gbrowse : chrX:10654518-10658269 (-) // 100.0 //
Probeset : 1634561_s_at
Accessions : protein= NP_001162716; /// NP_727444; /// NP_727445; /// NP_727446;, nucleotide= NM_001169245; /// NM_167242; /// NM_167243; /// NM_167244;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay
FlyMine data for FBgn0052675.
VDRC has 3 RNAi stocks for FBgn0052675 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 ± 54 of 4 1.60Up
Head124 ± 44 of 4 1.10None
Eye104 ± 34 of 4 0.91None
Thoracicoabdominal ganglion220 ± 114 of 4 1.90Up
Salivary gland209 ± 154 of 4 1.81Up
Crop110 ± 34 of 4 1.00None
Midgut188 ± 104 of 4 1.60Up
Tubule119 ± 34 of 4 1.00None
Hindgut141 ± 44 of 4 1.20Up
Heart80 ± 34 of 4 0.70Down
Fat body159 ± 314 of 4 1.39None
Ovary128 ± 34 of 4 1.10None
Testis163 ± 74 of 4 1.40Up
Male accessory glands214 ± 114 of 4 1.90Up
Virgin spermatheca74 ± 64 of 4 0.65Down
Mated spermatheca50 ± 44 of 4 0.44Down
Adult carcass144 ± 54 of 4 1.30Up
Larval CNS100 ± 104 of 4 0.87None
Larval Salivary gland125 ± 84 of 4 1.09None
Larval midgut128 ± 94 of 4 1.11None
Larval tubule150 ± 64 of 4 1.30Up
Larval hindgut87 ± 24 of 4 0.76Down
Larval fat body132 ± 84 of 4 1.20None
Larval trachea37 ± 64 of 4 0.33Down
Larval carcass55 ± 44 of 4 0.48Down
S2 cells (growing)408 ± 124 of 4 3.55Up
Whole fly115 ± 44 of 4

Looking for FBgn0052675. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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