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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052676 through 18771 annotations produced 1 hits



(CG32676):

Annotation Number : CG32676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052676
Gbrowse : chrX:10607150-10638938 (-) // 100.0 //
Probeset : 1623058_at
Accessions : protein= NP_572648;, nucleotide= NM_132420;
FlyMine data for FBgn0052676.
VDRC has 5 RNAi stocks for FBgn0052676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 14 of 4 0.40Down
Head92 34 of 4 0.60Down
Eye115 94 of 4 0.73Down
Thoracicoabdominal ganglion64 34 of 4 0.40Down
Salivary gland346 144 of 4 2.20Up
Crop194 74 of 4 1.20Up
Midgut270 64 of 4 1.70Up
Tubule181 64 of 4 1.20Up
Hindgut225 64 of 4 1.40Up
Heart124 74 of 4 0.79Down
Fat body232 234 of 4 1.48Up
Ovary374 84 of 4 2.40Up
Testis36 14 of 4 0.20Down
Male accessory glands196 84 of 4 1.20Up
Virgin spermatheca117 64 of 4 0.75Down
Mated spermatheca106 114 of 4 0.67Down
Adult carcass122 64 of 4 0.80Down
Larval CNS169 174 of 4 1.07None
Larval Salivary gland547 484 of 4 3.47Up
Larval midgut221 74 of 4 1.41Up
Larval tubule144 64 of 4 0.90None
Larval hindgut221 114 of 4 1.40Up
Larval fat body163 54 of 4 1.00None
Larval trachea320 364 of 4 2.03Up
Larval carcass376 194 of 4 2.39Up
S2 cells (growing)107 54 of 4 0.68Down
Whole fly157 64 of 4

Looking for FBgn0052676. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime