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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052677 through 18771 annotations produced 3 hits



X11Lbeta (X11Lbeta):

Annotation Number : S.CX001156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052677
Gbrowse : chrX:10567686-10573289 (+) // 100.0 //
Probeset : 1632788_at
Accessions : protein= NP_727440;, nucleotide= NM_167239;
Interpro : 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inf
FlyMine data for FBgn0052677.
VDRC has 2 RNAi stocks for FBgn0052677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 14 of 4 4.60Up
Head3 ± 10 of 4 0.60None
Eye7 ± 11 of 4 1.38None
Thoracicoabdominal ganglion17 ± 13 of 4 3.20Up
Salivary gland9 ± 20 of 4 1.76None
Crop6 ± 10 of 4 1.30None
Midgut11 ± 14 of 4 2.20Up
Tubule5 ± 00 of 4 1.10None
Hindgut4 ± 00 of 4 0.70None
Heart2 ± 11 of 4 0.53None
Fat body7 ± 40 of 4 1.35None
Ovary2 ± 11 of 4 0.50None
Testis2 ± 10 of 4 0.50None
Male accessory glands4 ± 10 of 4 0.80None
Virgin spermatheca2 ± 10 of 4 0.48None
Mated spermatheca1 ± 00 of 4 0.28None
Adult carcass4 ± 20 of 4 0.80None
Larval CNS16 ± 54 of 4 2.97Up
Larval Salivary gland4 ± 20 of 4 0.81None
Larval midgut8 ± 20 of 4 1.59None
Larval tubule10 ± 12 of 4 1.90None
Larval hindgut4 ± 02 of 4 0.76None
Larval fat body3 ± 10 of 4 0.60None
Larval trachea2 ± 10 of 4 0.40None
Larval carcass5 ± 12 of 4 1.01None
S2 cells (growing)4 ± 02 of 4 0.90None
Whole fly5 ± 10 of 4



X11Lbeta (X11Lbeta):

Annotation Number : S.CX001157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052677
Gbrowse : chrX:10589991-10596644 (+) // 100.0 //
Probeset : 1641411_at
Accessions : protein= NP_727440;, nucleotide= NM_167239;
Interpro : 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inf
FlyMine data for FBgn0052677.
VDRC has 2 RNAi stocks for FBgn0052677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 24 of 4 6.10Up
Head1 ± 00 of 4 0.60None
Eye7 ± 12 of 4 2.82Up
Thoracicoabdominal ganglion8 ± 12 of 4 3.30Up
Salivary gland9 ± 31 of 4 3.58None
Crop2 ± 00 of 4 0.90None
Midgut0 ± 00 of 4 0.30None
Tubule3 ± 00 of 4 1.20None
Hindgut0 ± 00 of 4 0.30None
Heart1 ± 00 of 4 0.59None
Fat body8 ± 61 of 4 3.21None
Ovary2 ± 00 of 4 1.00None
Testis3 ± 00 of 4 1.20None
Male accessory glands6 ± 10 of 4 2.60None
Virgin spermatheca6 ± 20 of 4 2.45None
Mated spermatheca7 ± 21 of 4 2.74None
Adult carcass10 ± 30 of 4 4.00None
Larval CNS10 ± 24 of 4 4.14Up
Larval Salivary gland8 ± 11 of 4 3.03None
Larval midgut3 ± 10 of 4 1.25None
Larval tubule1 ± 10 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.51None
Larval fat body4 ± 00 of 4 1.50None
Larval trachea1 ± 10 of 4 0.67None
Larval carcass1 ± 00 of 4 0.61None
S2 cells (growing)3 ± 10 of 4 1.21None
Whole fly2 ± 01 of 4



X11Lbeta (X11Lbeta):

Annotation Number : CG32677
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052677
Gbrowse : chrX:10596486-10603712 (+) // 100.0 //
Probeset : 1637820_at
Accessions : protein= NP_727440;, nucleotide= NM_167239;
Interpro : 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inf
FlyMine data for FBgn0052677.
BioGrid reports that CG32677 interacts with CG5053 CG5423 CG7164 CG33152 CG4719 .
VDRC has 2 RNAi stocks for FBgn0052677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain558 ± 204 of 427.70Up
Head115 ± 74 of 4 5.70Up
Eye149 ± 114 of 4 7.41Up
Thoracicoabdominal ganglion429 ± 204 of 421.30Up
Salivary gland16 ± 50 of 4 0.83None
Crop5 ± 20 of 4 0.30Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart8 ± 23 of 4 0.44Down
Fat body35 ± 184 of 4 1.74None
Ovary3 ± 10 of 4 0.20Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca29 ± 34 of 4 1.44None
Mated spermatheca28 ± 83 of 4 1.42None
Adult carcass13 ± 21 of 4 0.70None
Larval CNS330 ± 384 of 416.40Up
Larval Salivary gland10 ± 10 of 4 0.53Down
Larval midgut4 ± 10 of 4 0.23Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut5 ± 00 of 4 0.26Down
Larval fat body6 ± 10 of 4 0.30Down
Larval trachea9 ± 33 of 4 0.45Down
Larval carcass4 ± 00 of 4 0.24Down
S2 cells (growing)2 ± 10 of 4 0.14Down
Whole fly20 ± 14 of 4

Looking for FBgn0052677. 3 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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