FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052685 through 18771 annotations produced 1 hits

(CG32685):

Annotation Number : CG32685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052685
Gbrowse : chrX:9966178-9976515 (-) // 100.0 //
Probeset : 1634003_at
Accessions : protein= NP_727393;, nucleotide= NM_167218;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052685.
BDGP gene expression has embryonic in situ data for CG32685: 15 pix of staining in 21 body parts.
BioGrid reports that CG32685 interacts with CG5650 CG4087 CG6593 CG8614 CG15771 .
VDRC has 5 RNAi stocks for FBgn0052685 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	241 ± 6	4 of 4	2.80	Up
Head	87 ± 8	4 of 4	1.00	None
Eye	123 ± 6	4 of 4	1.45	Up
Thoracicoabdominal ganglion	192 ± 5	4 of 4	2.20	Up
Salivary gland	119 ± 9	4 of 4	1.39	Up
Crop	107 ± 2	4 of 4	1.30	Up
Midgut	74 ± 5	4 of 4	0.90	None
Tubule	87 ± 3	4 of 4	1.00	None
Hindgut	118 ± 5	4 of 4	1.40	Up
Heart	79 ± 7	4 of 4	0.93	None
Fat body	71 ± 7	4 of 4	0.84	None
Ovary	172 ± 2	4 of 4	2.00	Up
Testis	95 ± 3	4 of 4	1.10	None
Male accessory glands	166 ± 13	4 of 4	2.00	Up
Virgin spermatheca	84 ± 1	4 of 4	0.99	None
Mated spermatheca	90 ± 6	4 of 4	1.05	None
Adult carcass	62 ± 6	4 of 4	0.70	Down
Larval CNS	354 ± 43	4 of 4	4.15	Up
Larval Salivary gland	177 ± 3	4 of 4	2.07	Up
Larval midgut	83 ± 4	4 of 4	0.97	None
Larval tubule	104 ± 0	4 of 4	1.20	Up
Larval hindgut	138 ± 3	4 of 4	1.62	Up
Larval fat body	95 ± 4	4 of 4	1.10	None
Larval trachea	173 ± 5	4 of 4	2.03	Up
Larval carcass	119 ± 0	4 of 4	1.39	Up
S2 cells (growing)	166 ± 4	4 of 4	1.95	Up
Whole fly	85 ± 5	4 of 4

Looking for FBgn0052685. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720