FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052694 through 18771 annotations produced 3 hits

(CG32694):

Annotation Number : CG32694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052694
Gbrowse : chrX:9883727-9900918 (+) // 100.0 //
Probeset : 1636772_s_at
Accessions : protein= NP_727380; /// NP_727381; /// NP_727382; /// NP_727383;, nucleotide= NM_167209; /// NM_167210; /// NM_167211; /// NM_167212;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052694.
BDGP gene expression has embryonic in situ data for CG32694: 17 pix of staining in 9 body parts.
BioGrid reports that CG32694 interacts with CG32772 .
VDRC has 6 RNAi stocks for FBgn0052694 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	4 of 4	0.20	Down
Head	54 ± 3	4 of 4	1.20	None
Eye	44 ± 3	4 of 4	0.97	None
Thoracicoabdominal ganglion	16 ± 1	4 of 4	0.40	Down
Salivary gland	37 ± 2	4 of 4	0.83	None
Crop	928 ± 34	4 of 4	20.40	Up
Midgut	32 ± 0	4 of 4	0.70	Down
Tubule	17 ± 1	4 of 4	0.40	Down
Hindgut	396 ± 4	4 of 4	8.70	Up
Heart	17 ± 1	4 of 4	0.40	Down
Fat body	43 ± 8	4 of 4	0.95	None
Ovary	14 ± 1	4 of 4	0.30	Down
Testis	11 ± 1	4 of 4	0.30	Down
Male accessory glands	25 ± 1	4 of 4	0.60	Down
Virgin spermatheca	39 ± 1	4 of 4	0.87	None
Mated spermatheca	40 ± 1	4 of 4	0.88	None
Adult carcass	61 ± 8	4 of 4	1.40	None
Larval CNS	9 ± 3	4 of 4	0.21	Down
Larval Salivary gland	14 ± 2	4 of 4	0.32	Down
Larval midgut	30 ± 3	4 of 4	0.67	Down
Larval tubule	9 ± 1	2 of 4	0.20	Down
Larval hindgut	97 ± 7	4 of 4	2.15	Up
Larval fat body	7 ± 2	2 of 4	0.20	Down
Larval trachea	457 ± 90	4 of 4	10.06	Up
Larval carcass	172 ± 33	4 of 4	3.80	Up
S2 cells (growing)	7 ± 0	1 of 4	0.16	Down
Whole fly	45 ± 2	4 of 4

(CG32694):

Annotation Number : CG32694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052694
Gbrowse : chrX:9883727-9896198 (+) // 100.0 //
Probeset : 1634339_at
Accessions : protein= NP_727380; /// NP_727381; /// NP_727382; /// NP_727383;, nucleotide= NM_167209; /// NM_167210; /// NM_167211; /// NM_167212;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052694.
BDGP gene expression has embryonic in situ data for CG32694: 17 pix of staining in 9 body parts.
BioGrid reports that CG32694 interacts with CG32772 .
VDRC has 6 RNAi stocks for FBgn0052694 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.30	Down
Head	39 ± 0	4 of 4	2.40	Up
Eye	6 ± 3	1 of 4	0.41	None
Thoracicoabdominal ganglion	9 ± 1	0 of 4	0.60	Down
Salivary gland	6 ± 2	0 of 4	0.42	Down
Crop	620 ± 17	4 of 4	38.10	Up
Midgut	9 ± 2	0 of 4	0.60	None
Tubule	6 ± 1	0 of 4	0.40	Down
Hindgut	236 ± 5	4 of 4	14.50	Up
Heart	5 ± 2	1 of 4	0.34	Down
Fat body	17 ± 4	2 of 4	1.04	None
Ovary	2 ± 0	0 of 4	0.20	Down
Testis	2 ± 0	0 of 4	0.20	Down
Male accessory glands	8 ± 3	0 of 4	0.50	None
Virgin spermatheca	12 ± 3	0 of 4	0.76	None
Mated spermatheca	13 ± 1	0 of 4	0.85	None
Adult carcass	45 ± 4	4 of 4	2.80	Up
Larval CNS	6 ± 2	0 of 4	0.40	Down
Larval Salivary gland	5 ± 0	0 of 4	0.33	Down
Larval midgut	5 ± 1	0 of 4	0.35	Down
Larval tubule	6 ± 1	0 of 4	0.40	Down
Larval hindgut	91 ± 10	4 of 4	5.58	Up
Larval fat body	1 ± 0	0 of 4	0.10	Down
Larval trachea	184 ± 45	4 of 4	11.34	Up
Larval carcass	151 ± 35	4 of 4	9.30	Up
S2 cells (growing)	2 ± 0	0 of 4	0.13	Down
Whole fly	16 ± 0	3 of 4

(CG32694):

Annotation Number : CG32694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052694
Gbrowse : chrX:9883727-9895227 (+) // 100.0 //
Probeset : 1635605_at
Accessions : protein= NP_727380; /// NP_727381; /// NP_727382; /// NP_727383;, nucleotide= NM_167209; /// NM_167210; /// NM_167211; /// NM_167212;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052694.
BDGP gene expression has embryonic in situ data for CG32694: 17 pix of staining in 9 body parts.
BioGrid reports that CG32694 interacts with CG32772 .
VDRC has 6 RNAi stocks for FBgn0052694 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.50	None
Head	7 ± 1	1 of 4	1.00	None
Eye	2 ± 1	0 of 4	0.37	Down
Thoracicoabdominal ganglion	5 ± 2	0 of 4	0.70	None
Salivary gland	9 ± 3	1 of 4	1.15	None
Crop	34 ± 1	4 of 4	4.30	Up
Midgut	2 ± 0	0 of 4	0.30	Down
Tubule	5 ± 0	0 of 4	0.70	Down
Hindgut	26 ± 2	4 of 4	3.30	Up
Heart	0 ± 0	0 of 4	0.09	Down
Fat body	9 ± 6	2 of 4	1.25	None
Ovary	2 ± 1	0 of 4	0.40	Down
Testis	2 ± 1	0 of 4	0.30	Down
Male accessory glands	8 ± 1	1 of 4	1.00	None
Virgin spermatheca	4 ± 0	1 of 4	0.59	None
Mated spermatheca	6 ± 1	0 of 4	0.84	None
Adult carcass	15 ± 6	1 of 4	1.90	None
Larval CNS	5 ± 2	1 of 4	0.71	None
Larval Salivary gland	12 ± 3	1 of 4	1.58	None
Larval midgut	5 ± 1	0 of 4	0.64	None
Larval tubule	3 ± 0	0 of 4	0.40	Down
Larval hindgut	6 ± 1	1 of 4	0.82	None
Larval fat body	9 ± 0	0 of 4	1.10	None
Larval trachea	5 ± 1	2 of 4	0.73	None
Larval carcass	4 ± 1	0 of 4	0.54	None
S2 cells (growing)	3 ± 1	0 of 4	0.49	Down
Whole fly	7 ± 1	0 of 4

Looking for FBgn0052694. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720