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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052704 through 18771 annotations produced 1 hits



CG32704 (Ir8a):

Annotation Number : CG32704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052704
Gbrowse : chrX:9126758-9130618 (-) // 100.0 //
Probeset : 1631659_at
Accessions : protein= NP_727328;, nucleotide= NM_167185;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0052704.
Homophila reports that CG32704 is a close match (5e-48) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 1 RNAi stocks for FBgn0052704 available for purchase.
VDRC has 4 RNAi stocks for FBgn0052704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.60Down
Head19 14 of 4 2.50Up
Eye5 00 of 4 0.64None
Thoracicoabdominal ganglion5 11 of 4 0.60None
Salivary gland10 31 of 4 1.30None
Crop5 20 of 4 0.70None
Midgut13 01 of 4 1.70Up
Tubule7 01 of 4 1.00None
Hindgut5 11 of 4 0.70None
Heart6 22 of 4 0.78None
Fat body9 11 of 4 1.20None
Ovary3 01 of 4 0.40Down
Testis4 10 of 4 0.60None
Male accessory glands6 30 of 4 0.80None
Virgin spermatheca7 00 of 4 0.92None
Mated spermatheca4 10 of 4 0.53None
Adult carcass4 10 of 4 0.50None
Larval CNS6 12 of 4 0.86None
Larval Salivary gland16 21 of 4 2.05Up
Larval midgut12 11 of 4 1.61None
Larval tubule8 02 of 4 1.00None
Larval hindgut4 10 of 4 0.55Down
Larval fat body10 00 of 4 1.30None
Larval trachea6 30 of 4 0.84None
Larval carcass6 01 of 4 0.87None
S2 cells (growing)8 10 of 4 1.10None
Whole fly7 12 of 4

Looking for FBgn0052704. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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